JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ABI3BP_chr3_100744156_100998421	0/0	g0210	1	0	0	1	0	0	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0211	1	0	0	1	0	0	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0212	1	0	0	1	0	0	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0213	1	0	0	1	0	0	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0214	1	0	0	1	0	0	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0215	1	0	0	1	0	0	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0216	1	0	0	1	0	0	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0217	1	0	0	1	0	0	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0218	1	1	0	0	0	0	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0219	1	1	0	0	0	0	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0220	1	1	0	0	0	0	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0221	1	0	0	1	0	0	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0222	1	0	0	1	0	0	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0223	1	0	0	1	0	0	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0224	1	1	0	0	0	0	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0225	1	1	0	0	0	0	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0226	1	1	0	0	0	0	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0227	1	0	0	1	0	0	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0228	1	0	0	1	0	0	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0229	1	0	0	0	0	1	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0230	1	0	0	0	0	1	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0231	1	0	0	0	0	1	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0232	1	0	0	0	0	1	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0233	1	0	1	0	0	0	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0234	1	0	1	0	0	0	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0235	1	0	0	1	0	0	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0236	1	0	0	1	0	0	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0237	1	0	0	1	0	0	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	g0238	1	0	0	0	0	1	ABI3BP	chr3	100744156	100998421
ABI3_chr17_49205707_49228225	0/0	g0001	25	0	3	16	2	4	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	g0002	24	5	4	9	0	6	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/1	g0003	21	7	5	4	1	3	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	g0004	21	3	7	9	1	1	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	g0005	18	4	4	6	0	4	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	g0006	17	0	2	14	0	1	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	g0007	17	0	7	6	1	3	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	g0008	17	1	1	14	0	1	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	g0009	15	0	2	12	1	0	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	g0010	13	1	0	9	2	1	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	g0011	12	11	1	0	0	0	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	g0012	11	0	1	8	0	2	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	g0013	10	0	1	7	2	0	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	g0014	9	0	8	0	0	1	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	g0015	7	2	4	1	0	0	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	g0016	6	0	0	6	0	0	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	g0017	5	2	1	2	0	0	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	g0018	5	0	0	5	0	0	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	g0019	5	0	1	4	0	0	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	g0020	4	0	4	0	0	0	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	g0021	4	4	0	0	0	0	ABI3	chr17	49205707	49228225