JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARPC5_chr1_183615846_183640783	0/0	g0136	1	0	0	1	0	0	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	g0137	1	1	0	0	0	0	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	g0138	1	0	0	1	0	0	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	g0139	1	0	0	0	0	1	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	g0140	1	0	0	1	0	0	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	g0141	1	0	0	1	0	0	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	g0142	1	0	0	1	0	0	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	g0143	1	0	0	1	0	0	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	g0144	1	0	0	1	0	0	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	g0145	1	1	0	0	0	0	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	g0146	1	0	0	1	0	0	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	g0147	1	0	0	1	0	0	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	g0148	1	0	0	1	0	0	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	g0149	1	0	0	0	0	1	ARPC5	chr1	183615846	183640783
ARPC5_chr1_183615846_183640783	0/0	g0150	1	1	0	0	0	0	ARPC5	chr1	183615846	183640783
ARPIN_chr15_89890006_89917952	0/0	g0001	33	1	4	22	3	3	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0002	30	0	8	14	3	5	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0003	15	0	1	13	0	1	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0004	14	0	0	13	1	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0005	12	1	2	5	1	3	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0006	8	0	2	6	0	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0007	8	0	0	8	0	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0008	6	0	0	6	0	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0009	6	0	0	6	0	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0010	5	5	0	0	0	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0011	5	0	5	0	0	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0012	5	0	2	3	0	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0013	4	3	1	0	0	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0014	4	1	3	0	0	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0015	4	0	4	0	0	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0016	4	0	4	0	0	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0017	3	0	1	0	0	2	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0018	3	3	0	0	0	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0019	3	3	0	0	0	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0020	3	0	0	0	0	3	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0021	3	0	2	1	0	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0022	3	0	3	0	0	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0023	3	3	0	0	0	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0024	3	3	0	0	0	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0025	3	3	0	0	0	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0026	3	1	1	0	1	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0027	3	1	1	0	1	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0028	3	0	0	2	0	1	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0029	2	0	0	2	0	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0030	2	0	0	0	0	2	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0031	2	0	2	0	0	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0032	2	1	1	0	0	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0033	2	0	1	0	0	1	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0034	2	2	0	0	0	0	ARPIN	chr15	89890006	89917952
ARPIN_chr15_89890006_89917952	0/0	g0035	2	1	1	0	0	0	ARPIN	chr15	89890006	89917952