JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARPP21_chr3_35634525_35799486	0/0	g0231	1	0	0	1	0	0	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0232	1	0	0	0	0	1	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0233	1	0	0	1	0	0	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0234	1	0	0	0	0	1	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0235	1	0	0	0	0	1	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0236	1	0	0	1	0	0	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0237	1	0	0	1	0	0	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0238	1	0	0	1	0	0	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0239	1	0	0	1	0	0	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0240	1	0	0	1	0	0	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0241	1	0	0	1	0	0	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0242	1	0	0	1	0	0	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0243	1	0	0	1	0	0	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0244	1	0	0	0	0	1	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0245	1	0	0	1	0	0	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0246	1	0	0	0	0	1	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0247	1	0	0	0	0	1	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0248	1	1	0	0	0	0	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/1	g0249	1	0	0	0	0	0	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0250	1	0	0	1	0	0	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0251	1	0	0	0	0	1	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0252	1	0	0	0	0	1	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0253	1	0	0	0	0	1	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0254	1	1	0	0	0	0	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0255	1	1	0	0	0	0	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0256	1	1	0	0	0	0	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0257	1	0	1	0	0	0	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0258	1	1	0	0	0	0	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0259	1	1	0	0	0	0	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0260	1	1	0	0	0	0	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0261	1	1	0	0	0	0	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0262	1	0	0	0	1	0	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0263	1	0	0	0	1	0	ARPP21	chr3	35634525	35799486
ARPP21_chr3_35634525_35799486	0/0	g0264	1	1	0	0	0	0	ARPP21	chr3	35634525	35799486
ARR3_chrX_70263334_70286840	0/0	g0001	35	2	9	22	0	2	ARR3	chrX	70263334	70286840
ARR3_chrX_70263334_70286840	0/0	g0002	16	2	0	11	0	3	ARR3	chrX	70263334	70286840
ARR3_chrX_70263334_70286840	0/0	g0003	12	1	0	10	0	1	ARR3	chrX	70263334	70286840
ARR3_chrX_70263334_70286840	0/0	g0004	9	0	9	0	0	0	ARR3	chrX	70263334	70286840
ARR3_chrX_70263334_70286840	0/0	g0005	8	0	0	8	0	0	ARR3	chrX	70263334	70286840
ARR3_chrX_70263334_70286840	0/1	g0006	8	0	3	3	1	0	ARR3	chrX	70263334	70286840
ARR3_chrX_70263334_70286840	0/0	g0007	8	0	0	6	0	2	ARR3	chrX	70263334	70286840
ARR3_chrX_70263334_70286840	0/0	g0008	6	0	1	2	0	3	ARR3	chrX	70263334	70286840
ARR3_chrX_70263334_70286840	0/0	g0009	6	5	0	0	0	1	ARR3	chrX	70263334	70286840
ARR3_chrX_70263334_70286840	0/0	g0010	5	0	1	0	2	2	ARR3	chrX	70263334	70286840
ARR3_chrX_70263334_70286840	0/0	g0011	5	3	0	2	0	0	ARR3	chrX	70263334	70286840
ARR3_chrX_70263334_70286840	0/0	g0012	4	1	2	0	1	0	ARR3	chrX	70263334	70286840
ARR3_chrX_70263334_70286840	0/0	g0013	4	0	0	3	0	1	ARR3	chrX	70263334	70286840
ARR3_chrX_70263334_70286840	0/0	g0014	3	0	0	0	0	3	ARR3	chrX	70263334	70286840
ARR3_chrX_70263334_70286840	0/0	g0015	3	0	1	2	0	0	ARR3	chrX	70263334	70286840
ARR3_chrX_70263334_70286840	0/0	g0016	3	3	0	0	0	0	ARR3	chrX	70263334	70286840