JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARRDC3_chr5_91363631_91388317	0/0	g0084	1	1	0	0	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0085	1	0	0	1	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0086	1	1	0	0	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0087	1	1	0	0	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0088	1	0	0	1	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0089	1	0	0	1	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0090	1	1	0	0	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0091	1	1	0	0	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0092	1	1	0	0	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0093	1	0	0	1	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0094	1	0	0	1	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0095	1	0	0	1	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0096	1	1	0	0	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0097	1	1	0	0	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0098	1	0	0	1	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0099	1	1	0	0	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0100	1	0	0	0	1	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0101	1	0	1	0	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0102	1	0	1	0	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0103	1	0	0	1	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0104	1	0	0	1	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0105	1	0	1	0	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0106	1	0	1	0	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0107	1	0	0	1	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0108	1	0	0	1	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0109	1	0	0	1	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0110	1	0	0	1	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0111	1	0	0	1	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0112	1	1	0	0	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0113	1	0	1	0	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0114	1	0	1	0	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0115	1	0	1	0	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0116	1	1	0	0	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0117	1	1	0	0	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0118	1	0	1	0	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0119	1	1	0	0	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0120	1	0	0	1	0	0	ARRDC3	chr5	91363631	91388317
ARRDC3_chr5_91363631_91388317	0/0	g0121	1	1	0	0	0	0	ARRDC3	chr5	91363631	91388317
ARRDC4_chr15_97955703_97978833	0/0	g0001	66	0	7	48	2	9	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	1/0	g0002	40	4	11	15	6	3	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	g0003	34	0	3	27	1	3	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	g0004	30	0	2	27	0	1	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/1	g0005	19	1	9	7	0	1	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	g0006	10	8	2	0	0	0	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	g0007	9	0	0	4	0	5	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	g0008	8	8	0	0	0	0	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	g0009	7	0	2	5	0	0	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	g0010	7	6	1	0	0	0	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	g0011	6	0	3	0	1	2	ARRDC4	chr15	97955703	97978833
ARRDC4_chr15_97955703_97978833	0/0	g0012	6	0	0	6	0	0	ARRDC4	chr15	97955703	97978833