JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARRDC5_chr19_4885437_4907896	0/0	g0388	1	0	0	0	1	0	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	g0389	1	0	1	0	0	0	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	g0390	1	0	1	0	0	0	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	g0391	1	0	1	0	0	0	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	g0392	1	0	0	0	0	1	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	g0393	1	0	0	0	0	1	ARRDC5	chr19	4885437	4907896
ARRDC5_chr19_4885437_4907896	0/0	g0394	1	1	0	0	0	0	ARRDC5	chr19	4885437	4907896
ARSA_chr22_50617754_50633152	0/0	g0001	97	5	28	55	5	4	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0002	44	3	14	27	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0003	43	1	4	35	1	2	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0004	40	0	1	32	1	6	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	1/0	g0005	14	3	7	1	2	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0006	13	1	2	3	1	6	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/1	g0007	9	7	0	0	0	1	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0008	8	0	0	8	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0009	8	8	0	0	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0010	8	7	0	0	0	1	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0011	7	6	1	0	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0012	7	0	0	3	0	4	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0013	7	0	1	6	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0014	6	0	6	0	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0015	5	0	0	5	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0016	5	5	0	0	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0017	5	0	4	0	1	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0018	5	5	0	0	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0019	5	5	0	0	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0020	4	4	0	0	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0021	4	0	0	4	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0022	4	4	0	0	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0023	4	0	0	4	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0024	4	0	0	4	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0025	4	3	1	0	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0026	4	2	1	0	0	1	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0027	4	0	0	0	0	4	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0028	3	3	0	0	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0029	3	0	1	0	0	2	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0030	3	0	0	2	0	1	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0031	3	0	1	0	2	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0032	2	0	1	1	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0033	2	2	0	0	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0034	2	0	0	2	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0035	2	2	0	0	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0036	2	2	0	0	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0037	2	2	0	0	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0038	2	1	1	0	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0039	2	0	0	0	0	2	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0040	2	0	1	0	1	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0041	2	1	0	1	0	0	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0042	2	0	1	0	0	1	ARSA	chr22	50617754	50633152
ARSA_chr22_50617754_50633152	0/0	g0043	1	1	0	0	0	0	ARSA	chr22	50617754	50633152