JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARSH_chrX_3001546_3039111	0/0	g0227	1	1	0	0	0	0	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	g0228	1	1	0	0	0	0	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	g0229	1	1	0	0	0	0	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	g0230	1	1	0	0	0	0	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	g0231	1	1	0	0	0	0	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	g0232	1	1	0	0	0	0	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	g0233	1	1	0	0	0	0	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	g0234	1	1	0	0	0	0	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	g0235	1	0	0	0	0	1	ARSH	chrX	3001546	3039111
ARSI_chr5_150291343_150307905	0/0	g0001	242	42	41	125	9	25	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0002	58	11	13	25	1	8	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0003	21	0	2	16	1	2	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0004	9	7	2	0	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0005	9	0	0	9	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0006	7	0	0	6	0	1	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0007	6	4	0	1	0	1	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/1	g0008	6	0	1	2	2	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0009	4	0	0	4	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0010	4	1	2	0	0	1	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0011	4	4	0	0	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0012	4	4	0	0	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0013	4	0	2	2	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0014	4	0	0	4	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0015	4	0	0	3	0	1	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0016	3	0	2	1	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0017	3	3	0	0	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0018	3	0	0	3	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0019	3	2	1	0	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0020	3	3	0	0	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0021	3	3	0	0	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0022	3	1	2	0	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0023	3	0	2	0	1	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0024	3	3	0	0	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0025	2	0	0	0	0	2	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0026	2	0	0	2	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0027	2	0	0	0	2	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0028	2	0	2	0	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0029	2	0	0	0	0	2	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0030	2	2	0	0	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0031	2	2	0	0	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	1/0	g0032	2	0	1	0	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0033	1	0	0	1	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0034	1	0	0	1	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0035	1	0	0	1	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0036	1	0	1	0	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0037	1	0	1	0	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0038	1	0	1	0	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0039	1	0	0	1	0	0	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0040	1	0	0	0	0	1	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	g0041	1	0	0	1	0	0	ARSI	chr5	150291343	150307905