JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARSL_chrX_2929521_2969341	0/0	g0297	1	1	0	0	0	0	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	g0298	1	0	1	0	0	0	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	g0299	1	0	0	1	0	0	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	g0300	1	0	0	1	0	0	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	g0301	1	0	0	0	0	1	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	g0302	1	0	0	0	0	1	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	g0303	1	0	1	0	0	0	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	g0304	1	0	0	1	0	0	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	g0305	1	0	0	1	0	0	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	g0306	1	0	0	0	0	1	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	g0307	1	0	1	0	0	0	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	g0308	1	0	1	0	0	0	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	g0309	1	0	1	0	0	0	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	g0310	1	0	1	0	0	0	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	g0311	1	0	1	0	0	0	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	g0312	1	0	1	0	0	0	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	g0313	1	0	1	0	0	0	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	g0314	1	0	1	0	0	0	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	g0315	1	0	1	0	0	0	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	g0316	1	0	1	0	0	0	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	g0317	1	0	1	0	0	0	ARSL	chrX	2929521	2969341
ART1_chr11_3640128_3669416	0/0	g0001	10	1	1	7	1	0	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0002	8	0	0	7	0	1	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0003	7	0	0	7	0	0	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0004	5	0	0	5	0	0	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0005	4	0	0	4	0	0	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0006	4	0	0	3	0	1	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0007	3	0	1	0	0	2	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0008	3	3	0	0	0	0	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0009	3	3	0	0	0	0	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0010	3	0	0	1	0	2	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0011	3	0	0	3	0	0	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0012	3	0	0	3	0	0	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0013	3	0	0	3	0	0	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0014	3	0	3	0	0	0	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0015	3	0	0	3	0	0	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0016	2	2	0	0	0	0	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0017	2	0	0	2	0	0	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0018	2	2	0	0	0	0	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0019	2	2	0	0	0	0	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0020	2	2	0	0	0	0	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0021	2	0	0	0	0	2	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0022	2	1	1	0	0	0	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0023	2	0	0	2	0	0	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0024	2	2	0	0	0	0	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0025	2	0	0	0	2	0	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0026	2	0	0	1	0	1	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0027	2	0	1	1	0	0	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0028	2	1	0	1	0	0	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	g0029	2	2	0	0	0	0	ART1	chr11	3640128	3669416