JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ART5_chr11_3633512_3646992	0/0	g0103	1	0	0	1	0	0	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	g0104	1	1	0	0	0	0	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	g0105	1	0	0	1	0	0	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	g0106	1	0	0	0	0	1	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	g0107	1	1	0	0	0	0	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	g0108	1	1	0	0	0	0	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	g0109	1	1	0	0	0	0	ART5	chr11	3633512	3646992
ARTN_chr1_43928801_43942240	0/1	g0001	135	9	35	57	10	23	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	1/0	g0002	106	36	7	56	2	4	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	g0003	63	19	12	22	0	10	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	g0004	35	0	2	32	0	1	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	g0005	9	9	0	0	0	0	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	g0006	7	0	0	7	0	0	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	g0007	7	6	1	0	0	0	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	g0008	5	5	0	0	0	0	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	g0009	3	2	1	0	0	0	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	g0010	3	0	0	3	0	0	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	g0011	3	3	0	0	0	0	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	g0012	2	0	0	2	0	0	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	g0013	2	0	0	2	0	0	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	g0014	2	0	1	1	0	0	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	g0015	2	2	0	0	0	0	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	g0016	1	1	0	0	0	0	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	g0017	1	0	0	1	0	0	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	g0018	1	0	0	0	0	1	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	g0019	1	0	1	0	0	0	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	g0020	1	0	0	1	0	0	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	g0021	1	0	0	1	0	0	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	g0022	1	0	0	1	0	0	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	g0023	1	1	0	0	0	0	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	g0024	1	1	0	0	0	0	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	g0025	1	0	0	0	0	1	ARTN	chr1	43928801	43942240
ARV1_chr1_230974094_231005733	0/1	g0001	20	0	5	13	0	1	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0002	15	0	0	13	0	2	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0003	11	0	4	6	0	1	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0004	10	9	0	0	1	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0005	7	0	0	6	0	1	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0006	7	0	1	2	1	3	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0007	6	0	0	6	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0008	5	3	0	0	1	1	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0009	5	2	0	2	1	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0010	5	0	3	2	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0011	5	4	1	0	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0012	5	0	0	4	0	1	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0013	5	0	3	1	0	1	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0014	5	0	3	2	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0015	4	1	0	3	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0016	4	4	0	0	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0017	4	4	0	0	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0018	3	0	1	2	0	0	ARV1	chr1	230974094	231005733