JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARV1_chr1_230974094_231005733	0/0	g0219	1	0	0	0	0	1	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0220	1	0	0	0	0	1	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0221	1	0	0	1	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0222	1	0	0	1	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0223	1	0	0	1	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0224	1	0	0	1	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0225	1	0	0	1	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0226	1	0	1	0	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0227	1	0	0	1	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0228	1	0	1	0	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0229	1	0	0	1	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0230	1	0	0	1	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0231	1	1	0	0	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0232	1	0	0	1	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0233	1	1	0	0	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0234	1	0	0	1	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0235	1	0	0	0	0	1	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0236	1	1	0	0	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0237	1	0	0	1	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0238	1	1	0	0	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0239	1	1	0	0	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0240	1	1	0	0	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0241	1	0	0	1	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0242	1	0	0	1	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0243	1	0	0	1	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0244	1	0	0	1	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0245	1	0	0	0	0	1	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0246	1	0	0	1	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0247	1	1	0	0	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0248	1	0	0	0	0	1	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0249	1	0	0	0	0	1	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0250	1	1	0	0	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0251	1	1	0	0	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0252	1	1	0	0	0	0	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	g0253	1	0	0	1	0	0	ARV1	chr1	230974094	231005733
ARVCF_chr22_19964896_20021823	0/0	g0001	11	0	0	10	0	1	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0002	9	0	0	7	2	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0003	8	3	0	5	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0004	7	0	1	5	0	1	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0005	7	0	0	7	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0006	6	0	2	1	1	2	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0007	6	0	0	6	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0008	5	0	3	0	0	2	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0009	5	5	0	0	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0010	5	0	0	5	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0011	4	4	0	0	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0012	4	1	2	0	1	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0013	4	1	3	0	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0014	4	1	1	0	0	2	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0015	3	3	0	0	0	0	ARVCF	chr22	19964896	20021823