JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARVCF_chr22_19964896_20021823	0/0	g0216	1	1	0	0	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0217	1	0	1	0	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0218	1	0	0	0	1	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0219	1	0	0	0	1	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0220	1	0	0	1	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0221	1	0	0	0	1	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0222	1	0	0	1	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0223	1	0	0	1	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0224	1	1	0	0	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0225	1	0	0	1	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0226	1	0	0	1	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0227	1	1	0	0	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0228	1	0	0	1	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0229	1	0	0	0	0	1	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0230	1	1	0	0	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0231	1	0	0	1	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0232	1	0	0	1	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0233	1	0	0	1	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0234	1	0	0	1	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0235	1	0	0	0	0	1	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0236	1	0	0	0	0	1	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0237	1	0	0	1	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0238	1	0	1	0	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0239	1	0	0	1	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0240	1	1	0	0	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0241	1	0	0	1	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0242	1	0	0	1	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0243	1	0	0	1	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0244	1	0	0	1	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0245	1	0	1	0	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0246	1	0	0	1	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0247	1	0	0	0	1	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0248	1	0	1	0	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0249	1	0	0	1	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0250	1	0	0	0	0	1	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0251	1	0	1	0	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0252	1	0	0	0	0	1	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0253	1	0	0	1	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0254	1	0	0	0	0	1	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0255	1	0	0	1	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0256	1	1	0	0	0	0	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	g0257	1	0	1	0	0	0	ARVCF	chr22	19964896	20021823
ARX_chrX_24998694_25020965	0/0	g0001	43	0	12	21	3	7	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	g0002	40	7	6	21	3	3	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	g0003	25	5	3	16	0	1	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	g0004	15	2	1	9	1	2	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	1/0	g0005	12	0	5	2	0	4	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	g0006	10	0	3	4	0	3	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	g0007	8	5	2	1	0	0	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	g0008	8	1	4	3	0	0	ARX	chrX	24998694	25020965