JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AR_chrX_67539021_67735619	0/0	g0160	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0161	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0162	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0163	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0164	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0165	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0166	1	0	1	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0167	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0168	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0169	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0170	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0171	1	0	1	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0172	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0173	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0174	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0175	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0176	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0177	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0178	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0179	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0180	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0181	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0182	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0183	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0184	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0185	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0186	1	1	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0187	1	0	0	0	1	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	1/0	g0188	1	0	0	0	0	0	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0189	1	0	0	0	0	1	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	g0190	1	0	0	0	0	1	AR	chrX	67539021	67735619
AS3MT_chr10_102864470_102906899	0/0	g0001	5	1	2	2	0	0	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	g0002	3	0	0	2	0	1	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	g0003	3	1	0	1	0	1	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	g0004	2	0	2	0	0	0	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	g0005	2	0	1	1	0	0	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	g0006	2	0	0	2	0	0	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	g0007	2	0	0	2	0	0	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	g0008	2	0	0	1	0	1	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	g0009	2	0	1	1	0	0	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	g0010	2	0	0	2	0	0	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	g0011	2	0	0	2	0	0	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	g0012	2	2	0	0	0	0	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	g0013	2	0	0	2	0	0	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	g0014	2	0	2	0	0	0	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	g0015	1	1	0	0	0	0	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	g0016	1	0	0	1	0	0	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	g0017	1	1	0	0	0	0	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	g0018	1	1	0	0	0	0	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	g0019	1	1	0	0	0	0	AS3MT	chr10	102864470	102906899