JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ASB11_chrX_15276697_15320640	0/0	g0254	1	0	0	1	0	0	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	g0255	1	1	0	0	0	0	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	g0256	1	1	0	0	0	0	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	g0257	1	1	0	0	0	0	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	g0258	1	1	0	0	0	0	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	g0259	1	1	0	0	0	0	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	g0260	1	1	0	0	0	0	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	g0261	1	1	0	0	0	0	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	g0262	1	0	0	1	0	0	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	g0263	1	0	0	1	0	0	ASB11	chrX	15276697	15320640
ASB12_chrX_64219194_64235607	1/1	g0001	159	5	37	83	11	21	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0002	27	24	3	0	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0003	23	21	2	0	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0004	14	13	0	0	0	1	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0005	9	0	0	9	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0006	5	0	0	5	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0007	3	0	0	3	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0008	3	3	0	0	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0009	3	3	0	0	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0010	2	0	0	2	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0011	2	0	0	2	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0012	2	0	2	0	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0013	2	0	2	0	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0014	2	0	0	2	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0015	1	0	1	0	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0016	1	0	0	1	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0017	1	1	0	0	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0018	1	0	0	1	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0019	1	0	0	1	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0020	1	0	0	1	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0021	1	0	0	1	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0022	1	0	0	0	0	1	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0023	1	0	0	0	0	1	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0024	1	0	1	0	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0025	1	0	0	0	0	1	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0026	1	0	1	0	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0027	1	0	0	0	0	1	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0028	1	0	0	0	0	1	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0029	1	0	0	1	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0030	1	0	0	1	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0031	1	0	0	0	0	1	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0032	1	0	0	1	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0033	1	0	0	1	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0034	1	0	1	0	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0035	1	0	0	0	0	1	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0036	1	0	1	0	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0037	1	1	0	0	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0038	1	0	0	1	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0039	1	1	0	0	0	0	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	g0040	1	1	0	0	0	0	ASB12	chrX	64219194	64235607