JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ASB16_chr17_44165704_44184084	0/0	g0100	1	0	0	1	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0101	1	0	0	1	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0102	1	1	0	0	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0103	1	0	0	1	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0104	1	1	0	0	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0105	1	1	0	0	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0106	1	1	0	0	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0107	1	1	0	0	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0108	1	1	0	0	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0109	1	0	1	0	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0110	1	0	0	1	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0111	1	1	0	0	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0112	1	1	0	0	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0113	1	0	0	1	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0114	1	0	0	1	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0115	1	0	0	1	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0116	1	0	0	1	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0117	1	0	0	1	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0118	1	0	0	0	0	1	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0119	1	0	1	0	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0120	1	0	0	1	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0121	1	0	0	0	0	1	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0122	1	0	0	1	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0123	1	0	0	0	0	1	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0124	1	0	1	0	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0125	1	0	1	0	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0126	1	0	1	0	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0127	1	0	0	0	0	1	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0128	1	0	0	1	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0129	1	0	0	1	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0130	1	1	0	0	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0131	1	0	0	1	0	0	ASB16	chr17	44165704	44184084
ASB16_chr17_44165704_44184084	0/0	g0132	1	0	0	1	0	0	ASB16	chr17	44165704	44184084
ASB17_chr1_75913873_75937404	0/0	g0001	57	1	8	38	3	7	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	g0002	27	2	14	0	4	7	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	g0003	21	0	7	6	2	6	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/1	g0004	19	0	9	9	0	0	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	g0005	16	0	1	12	0	3	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	g0006	16	1	0	15	0	0	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	g0007	11	5	2	2	1	1	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	g0008	9	0	0	9	0	0	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	g0009	8	0	0	8	0	0	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	1/0	g0010	7	6	0	0	0	0	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	g0011	6	0	0	6	0	0	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	g0012	6	0	0	6	0	0	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	g0013	5	0	1	0	1	3	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	g0014	5	5	0	0	0	0	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	g0015	5	5	0	0	0	0	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	g0016	5	0	4	0	0	1	ASB17	chr1	75913873	75937404
ASB17_chr1_75913873_75937404	0/0	g0017	5	5	0	0	0	0	ASB17	chr1	75913873	75937404