JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ASB18_chr2_236188459_236269406	0/0	g0216	1	1	0	0	0	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0217	1	1	0	0	0	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0218	1	0	0	0	1	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0219	1	0	0	1	0	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0220	1	1	0	0	0	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0221	1	1	0	0	0	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0222	1	1	0	0	0	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0223	1	0	0	1	0	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0224	1	0	0	1	0	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0225	1	1	0	0	0	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0226	1	0	0	0	0	1	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0227	1	1	0	0	0	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0228	1	1	0	0	0	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0229	1	1	0	0	0	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0230	1	0	1	0	0	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0231	1	1	0	0	0	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0232	1	1	0	0	0	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0233	1	0	0	1	0	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0234	1	1	0	0	0	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0235	1	1	0	0	0	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0236	1	1	0	0	0	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0237	1	1	0	0	0	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0238	1	0	1	0	0	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0239	1	1	0	0	0	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0240	1	1	0	0	0	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0241	1	1	0	0	0	0	ASB18	chr2	236188459	236269406
ASB18_chr2_236188459_236269406	0/0	g0242	1	0	1	0	0	0	ASB18	chr2	236188459	236269406
ASB1_chr2_238421927_238457250	1/0	g0001	68	2	7	46	4	8	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	g0002	26	0	5	21	0	0	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	g0003	20	4	6	7	1	2	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	g0004	16	9	3	4	0	0	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	g0005	15	4	4	0	2	5	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	g0006	13	0	5	5	0	3	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	g0007	7	0	1	6	0	0	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	g0008	7	0	0	7	0	0	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	g0009	7	6	1	0	0	0	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	g0010	5	0	2	2	0	1	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	g0011	5	0	1	4	0	0	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	g0012	5	0	0	3	0	2	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	g0013	4	4	0	0	0	0	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	g0014	4	0	0	4	0	0	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	g0015	4	0	0	4	0	0	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	g0016	4	4	0	0	0	0	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	g0017	3	0	3	0	0	0	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	g0018	3	0	0	3	0	0	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	g0019	3	0	0	3	0	0	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	g0020	3	0	0	3	0	0	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	g0021	3	0	2	0	0	1	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	g0022	3	0	0	3	0	0	ASB1	chr2	238421927	238457250
ASB1_chr2_238421927_238457250	0/0	g0023	3	3	0	0	0	0	ASB1	chr2	238421927	238457250