JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ASB5_chr4_176208673_176274222	0/0	g0364	1	1	0	0	0	0	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	g0365	1	0	0	1	0	0	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	g0366	1	0	0	1	0	0	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	g0367	1	0	0	0	0	1	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	g0368	1	0	0	0	0	1	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	g0369	1	0	0	0	1	0	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	g0370	1	0	0	1	0	0	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	g0371	1	0	0	1	0	0	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	g0372	1	0	0	1	0	0	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	g0373	1	0	0	1	0	0	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	g0374	1	0	0	1	0	0	ASB5	chr4	176208673	176274222
ASB5_chr4_176208673_176274222	0/0	g0375	1	0	0	1	0	0	ASB5	chr4	176208673	176274222
ASB6_chr9_129629605_129647151	0/1	g0001	82	18	13	36	3	11	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0002	61	1	10	44	1	5	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0003	50	0	15	27	2	6	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0004	49	12	12	7	7	11	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0005	16	4	0	7	1	4	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0006	15	0	0	15	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0007	14	6	5	2	0	1	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0008	12	0	0	10	0	2	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0009	8	0	6	0	0	2	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0010	7	7	0	0	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0011	6	5	1	0	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0012	6	0	0	6	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0013	6	6	0	0	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0014	5	5	0	0	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0015	5	5	0	0	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0016	5	0	0	5	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0017	4	2	1	0	1	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0018	4	4	0	0	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0019	3	0	1	0	2	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0020	3	2	1	0	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0021	3	0	0	3	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0022	3	3	0	0	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0023	2	2	0	0	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0024	2	2	0	0	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0025	2	1	1	0	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0026	2	0	0	2	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0027	2	0	2	0	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0028	2	0	0	2	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0029	2	0	0	2	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0030	2	0	0	0	0	2	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0031	2	0	0	2	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0032	2	0	0	2	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	1/0	g0033	2	0	0	0	1	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0034	1	0	1	0	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0035	1	1	0	0	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0036	1	1	0	0	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0037	1	1	0	0	0	0	ASB6	chr9	129629605	129647151
ASB6_chr9_129629605_129647151	0/0	g0038	1	0	0	1	0	0	ASB6	chr9	129629605	129647151