JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ASCC3_chr6_100503194_100886329	0/0	g0311	1	1	0	0	0	0	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	g0312	1	1	0	0	0	0	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	g0313	1	1	0	0	0	0	ASCC3	chr6	100503194	100886329
ASCC3_chr6_100503194_100886329	0/0	g0314	1	1	0	0	0	0	ASCC3	chr6	100503194	100886329
ASCL1_chr12_102952674_102965513	1/1	g0001	350	89	70	135	14	40	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	g0002	2	2	0	0	0	0	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	g0003	1	1	0	0	0	0	ASCL1	chr12	102952674	102965513
ASCL1_chr12_102952674_102965513	0/0	g0004	1	0	0	1	0	0	ASCL1	chr12	102952674	102965513
ASCL2_chr11_2263498_2275588	0/0	g0001	171	58	22	77	1	13	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	1/1	g0002	171	10	47	73	10	29	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	g0003	24	7	7	8	2	0	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	g0004	12	0	0	12	0	0	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	g0005	7	0	0	6	0	1	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	g0006	6	5	1	0	0	0	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	g0007	5	5	0	0	0	0	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	g0008	4	4	0	0	0	0	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	g0009	3	3	0	0	0	0	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	g0010	2	1	1	0	0	0	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	g0011	2	0	0	0	0	2	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	g0012	1	0	0	1	0	0	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	g0013	1	1	0	0	0	0	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	g0014	1	0	0	1	0	0	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	g0015	1	1	0	0	0	0	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	g0016	1	0	0	1	0	0	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	g0017	1	0	1	0	0	0	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	g0018	1	0	0	1	0	0	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	g0019	1	0	0	1	0	0	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	g0020	1	0	0	1	0	0	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	g0021	1	0	0	0	1	0	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	g0022	1	0	0	0	0	1	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	g0023	1	0	1	0	0	0	ASCL2	chr11	2263498	2275588
ASCL2_chr11_2263498_2275588	0/0	g0024	1	1	0	0	0	0	ASCL2	chr11	2263498	2275588
ASCL3_chr11_8932578_8948016	0/1	g0001	100	7	28	47	7	10	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	g0002	95	15	7	64	2	7	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	g0003	39	1	4	25	2	7	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	g0004	28	9	2	15	0	2	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	1/0	g0005	23	17	5	0	0	0	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	g0006	20	2	7	0	4	7	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	g0007	9	1	7	0	0	1	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	g0008	8	0	0	8	0	0	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	g0009	7	1	0	5	0	1	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	g0010	6	0	0	6	0	0	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	g0011	5	5	0	0	0	0	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	g0012	5	0	1	0	0	4	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	g0013	4	4	0	0	0	0	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	g0014	4	4	0	0	0	0	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	g0015	4	4	0	0	0	0	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	g0016	4	0	0	4	0	0	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	g0017	4	0	0	4	0	0	ASCL3	chr11	8932578	8948016
ASCL3_chr11_8932578_8948016	0/0	g0018	3	2	1	0	0	0	ASCL3	chr11	8932578	8948016