JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ASCL3_chr11_8932578_8948016	0/0	g0069	1	0	0	1	0	0	ASCL3	chr11	8932578	8948016
ASCL4_chr12_107769704_107781644	1/1	g0000	462	96	78	218	18	50	ASCL4	chr12	107769704	107781644
ASCL5_chr1_201108943_201132184	0/0	g0001	86	9	14	55	2	6	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	1/0	g0002	47	6	10	16	6	8	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0003	26	2	0	24	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0004	18	0	2	14	0	2	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0005	16	0	0	16	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0006	11	0	10	0	1	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0007	9	9	0	0	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0008	8	7	1	0	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0009	8	2	5	0	1	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0010	7	1	1	5	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0011	6	0	4	1	0	1	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0012	6	0	0	5	0	1	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0013	6	0	4	0	0	2	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0014	4	4	0	0	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0015	4	2	0	0	0	2	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0016	4	2	0	1	0	1	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0017	4	0	1	3	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0018	3	0	2	0	1	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0019	3	3	0	0	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0020	3	0	0	3	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0021	3	0	0	3	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0022	2	2	0	0	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0023	2	2	0	0	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0024	2	2	0	0	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0025	2	2	0	0	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0026	2	0	2	0	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0027	2	0	0	0	1	1	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0028	2	0	1	0	0	1	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0029	2	1	1	0	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0030	2	0	0	0	1	1	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0031	2	0	0	2	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0032	2	0	1	1	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0033	2	0	0	1	0	1	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0034	2	2	0	0	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0035	2	2	0	0	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0036	2	2	0	0	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0037	2	0	0	2	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0038	2	0	0	2	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0039	2	0	1	1	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0040	2	0	0	2	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0041	2	0	0	2	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0042	2	2	0	0	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0043	1	1	0	0	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0044	1	1	0	0	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0045	1	1	0	0	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0046	1	0	1	0	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0047	1	0	1	0	0	0	ASCL5	chr1	201108943	201132184
ASCL5_chr1_201108943_201132184	0/0	g0048	1	0	0	0	0	1	ASCL5	chr1	201108943	201132184