JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ASDURF_chr2_189656459_189671401	0/0	g0113	1	0	0	1	0	0	ASDURF	chr2	189656459	189671401
ASDURF_chr2_189656459_189671401	0/0	g0114	1	0	0	0	0	1	ASDURF	chr2	189656459	189671401
ASDURF_chr2_189656459_189671401	0/0	g0115	1	1	0	0	0	0	ASDURF	chr2	189656459	189671401
ASDURF_chr2_189656459_189671401	0/0	g0116	1	0	0	1	0	0	ASDURF	chr2	189656459	189671401
ASDURF_chr2_189656459_189671401	0/0	g0117	1	0	0	1	0	0	ASDURF	chr2	189656459	189671401
ASDURF_chr2_189656459_189671401	0/0	g0118	1	0	1	0	0	0	ASDURF	chr2	189656459	189671401
ASDURF_chr2_189656459_189671401	0/0	g0119	1	1	0	0	0	0	ASDURF	chr2	189656459	189671401
ASDURF_chr2_189656459_189671401	0/0	g0120	1	1	0	0	0	0	ASDURF	chr2	189656459	189671401
ASDURF_chr2_189656459_189671401	0/0	g0121	1	1	0	0	0	0	ASDURF	chr2	189656459	189671401
ASDURF_chr2_189656459_189671401	0/0	g0122	1	0	1	0	0	0	ASDURF	chr2	189656459	189671401
ASDURF_chr2_189656459_189671401	0/0	g0123	1	1	0	0	0	0	ASDURF	chr2	189656459	189671401
ASDURF_chr2_189656459_189671401	0/0	g0124	1	0	1	0	0	0	ASDURF	chr2	189656459	189671401
ASF1A_chr6_118889152_118914171	0/0	g0001	59	0	13	40	1	5	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0002	44	3	2	33	2	4	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0003	42	2	4	34	0	2	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0004	32	5	8	12	1	6	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0005	24	7	6	8	2	1	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/1	g0006	22	1	11	0	2	7	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0007	13	0	3	10	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0008	7	0	0	7	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0009	7	0	2	3	0	2	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0010	7	0	6	0	1	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0011	7	7	0	0	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0012	6	5	1	0	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0013	6	6	0	0	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0014	5	5	0	0	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0015	4	4	0	0	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0016	4	4	0	0	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0017	4	0	1	0	1	2	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0018	4	3	0	1	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0019	2	0	0	2	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0020	2	2	0	0	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0021	2	2	0	0	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0022	2	2	0	0	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0023	2	0	2	0	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0024	2	2	0	0	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0025	2	1	1	0	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0026	2	2	0	0	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0027	2	1	1	0	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0028	2	0	0	0	0	2	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0029	2	0	0	0	0	2	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0030	2	0	0	2	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0031	2	0	1	0	1	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0032	2	1	0	0	0	1	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0033	2	0	0	2	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0034	1	0	0	1	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0035	1	1	0	0	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0036	1	1	0	0	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0037	1	0	0	1	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0038	1	0	0	1	0	0	ASF1A	chr6	118889152	118914171