JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ASF1A_chr6_118889152_118914171	0/0	g0089	1	0	0	1	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0090	1	0	0	0	0	1	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0091	1	0	0	1	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0092	1	0	0	0	1	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0093	1	0	0	1	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0094	1	0	0	0	0	1	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0095	1	0	0	0	0	1	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0096	1	1	0	0	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0097	1	0	0	1	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0098	1	0	0	1	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0099	1	0	0	0	0	1	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0100	1	0	1	0	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0101	1	0	1	0	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0102	1	0	0	0	0	1	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0103	1	0	0	0	1	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0104	1	0	0	0	1	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0105	1	0	1	0	0	0	ASF1A	chr6	118889152	118914171
ASF1A_chr6_118889152_118914171	0/0	g0106	1	1	0	0	0	0	ASF1A	chr6	118889152	118914171
ASF1B_chr19_14114512_14141589	0/0	g0001	13	2	1	10	0	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/1	g0002	8	0	4	0	3	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0003	8	1	1	6	0	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0004	8	0	3	1	1	3	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0005	7	1	2	4	0	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0006	5	3	2	0	0	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0007	5	0	4	1	0	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0008	4	4	0	0	0	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	1/0	g0009	4	2	0	0	1	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0010	3	0	2	0	0	1	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0011	3	1	2	0	0	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0012	3	0	0	3	0	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0013	3	0	1	2	0	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0014	3	0	0	3	0	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0015	3	3	0	0	0	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0016	3	0	0	2	1	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0017	3	0	0	2	0	1	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0018	3	0	3	0	0	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0019	2	2	0	0	0	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0020	2	0	1	0	1	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0021	2	0	2	0	0	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0022	2	2	0	0	0	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0023	2	0	1	1	0	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0024	2	0	0	1	0	1	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0025	2	0	1	0	1	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0026	2	0	1	0	0	1	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0027	2	0	1	0	0	1	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0028	2	2	0	0	0	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0029	2	0	1	1	0	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0030	2	1	0	0	1	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0031	2	0	0	2	0	0	ASF1B	chr19	14114512	14141589
ASF1B_chr19_14114512_14141589	0/0	g0032	2	0	0	1	0	1	ASF1B	chr19	14114512	14141589