JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ASIC5_chr4_155824729_155871277	0/0	g0148	1	0	0	1	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0149	1	1	0	0	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0150	1	1	0	0	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0151	1	0	1	0	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0152	1	0	1	0	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0153	1	0	0	0	1	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0154	1	0	1	0	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0155	1	0	1	0	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0156	1	0	1	0	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0157	1	0	0	1	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0158	1	0	0	0	0	1	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0159	1	0	1	0	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0160	1	0	0	1	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0161	1	0	1	0	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0162	1	0	0	1	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0163	1	0	0	1	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0164	1	0	0	0	0	1	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0165	1	0	0	0	0	1	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0166	1	0	0	1	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0167	1	0	0	1	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0168	1	0	1	0	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0169	1	0	0	0	0	1	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0170	1	0	1	0	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0171	1	1	0	0	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0172	1	0	0	1	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0173	1	1	0	0	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0174	1	1	0	0	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0175	1	0	0	1	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0176	1	0	0	0	0	1	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0177	1	0	0	1	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0178	1	1	0	0	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0179	1	1	0	0	0	0	ASIC5	chr4	155824729	155871277
ASIC5_chr4_155824729_155871277	0/0	g0180	1	0	1	0	0	0	ASIC5	chr4	155824729	155871277
ASIP_chr20_34236423_34274344	0/0	g0001	8	6	2	0	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0002	6	0	2	4	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0003	5	0	1	2	2	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0004	5	0	3	0	1	1	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0005	5	5	0	0	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0006	5	0	1	4	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0007	4	0	0	2	1	1	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0008	3	3	0	0	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0009	3	0	0	3	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0010	3	0	0	3	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0011	3	0	0	3	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0012	2	2	0	0	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0013	2	1	1	0	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0014	2	0	0	2	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0015	2	0	2	0	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	1/0	g0016	2	1	0	0	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0017	2	0	0	2	0	0	ASIP	chr20	34236423	34274344