JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ASIP_chr20_34236423_34274344	0/0	g0218	1	0	1	0	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0219	1	0	0	1	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0220	1	0	0	1	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0221	1	0	0	0	0	1	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0222	1	0	0	1	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0223	1	0	0	0	0	1	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0224	1	1	0	0	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0225	1	0	0	0	0	1	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0226	1	0	1	0	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0227	1	0	0	0	0	1	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0228	1	0	0	1	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0229	1	0	0	0	0	1	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0230	1	0	0	1	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0231	1	0	0	1	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0232	1	0	0	1	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0233	1	0	0	1	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0234	1	0	0	1	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0235	1	1	0	0	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0236	1	0	0	1	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0237	1	1	0	0	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0238	1	0	0	1	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0239	1	0	0	1	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0240	1	0	1	0	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0241	1	0	1	0	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0242	1	1	0	0	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0243	1	1	0	0	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0244	1	0	0	0	0	1	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0245	1	0	0	1	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0246	1	0	0	1	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0247	1	0	0	1	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0248	1	0	0	1	0	0	ASIP	chr20	34236423	34274344
ASIP_chr20_34236423_34274344	0/0	g0249	1	0	0	0	0	1	ASIP	chr20	34236423	34274344
ASL_chr7_66070819_66098576	0/0	g0001	26	0	4	18	0	4	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	g0002	22	2	7	9	2	2	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	g0003	17	0	2	13	1	1	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	g0004	10	0	0	9	1	0	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	g0005	9	0	4	4	0	1	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	g0006	8	7	1	0	0	0	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	g0007	8	8	0	0	0	0	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	g0008	8	6	1	0	0	1	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	1/0	g0009	7	2	2	0	1	1	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	g0010	7	1	0	6	0	0	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	g0011	6	0	1	5	0	0	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/1	g0012	5	1	0	0	0	3	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	g0013	4	0	1	3	0	0	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	g0014	3	0	0	3	0	0	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	g0015	3	0	0	3	0	0	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	g0016	3	0	1	1	0	1	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	g0017	3	2	0	1	0	0	ASL	chr7	66070819	66098576
ASL_chr7_66070819_66098576	0/0	g0018	3	3	0	0	0	0	ASL	chr7	66070819	66098576