JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ASNSD1_chr2_189656459_189675831	0/0	g0098	1	1	0	0	0	0	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0099	1	1	0	0	0	0	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0100	1	0	1	0	0	0	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0101	1	1	0	0	0	0	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0102	1	1	0	0	0	0	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0103	1	0	0	1	0	0	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0104	1	1	0	0	0	0	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0105	1	0	0	0	1	0	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0106	1	0	0	0	0	1	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0107	1	1	0	0	0	0	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0108	1	0	0	0	0	1	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0109	1	0	0	1	0	0	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0110	1	0	0	1	0	0	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0111	1	0	0	1	0	0	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0112	1	0	0	0	0	1	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0113	1	0	0	0	0	1	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0114	1	1	0	0	0	0	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0115	1	1	0	0	0	0	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0116	1	0	0	1	0	0	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0117	1	0	0	0	0	1	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0118	1	1	0	0	0	0	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0119	1	0	0	1	0	0	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0120	1	0	0	1	0	0	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0121	1	0	1	0	0	0	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0122	1	1	0	0	0	0	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0123	1	1	0	0	0	0	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0124	1	1	0	0	0	0	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0125	1	0	1	0	0	0	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0126	1	1	0	0	0	0	ASNSD1	chr2	189656459	189675831
ASNSD1_chr2_189656459_189675831	0/0	g0127	1	0	1	0	0	0	ASNSD1	chr2	189656459	189675831
ASNS_chr7_97846677_97877408	0/0	g0001	21	0	5	13	0	3	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	g0002	18	1	3	11	3	0	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	g0003	17	0	2	12	1	2	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	g0004	14	0	1	9	0	4	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	g0005	12	1	3	7	1	0	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	g0006	12	0	1	11	0	0	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	g0007	9	0	1	8	0	0	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	g0008	6	0	3	0	1	2	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	g0009	6	5	1	0	0	0	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	g0010	6	0	0	6	0	0	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	g0011	6	0	0	5	1	0	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	g0012	5	5	0	0	0	0	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	g0013	5	0	0	5	0	0	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/1	g0014	5	0	4	0	0	0	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	g0015	5	0	0	5	0	0	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	g0016	4	0	0	4	0	0	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	g0017	4	0	3	0	1	0	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	g0018	4	0	0	4	0	0	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	g0019	4	0	4	0	0	0	ASNS	chr7	97846677	97877408
ASNS_chr7_97846677_97877408	0/0	g0020	4	0	3	0	1	0	ASNS	chr7	97846677	97877408