JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ASS1_chr9_130439961_130506274	0/0	g0345	1	1	0	0	0	0	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	g0346	1	1	0	0	0	0	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	g0347	1	1	0	0	0	0	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	g0348	1	1	0	0	0	0	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	g0349	1	1	0	0	0	0	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	g0350	1	1	0	0	0	0	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	g0351	1	1	0	0	0	0	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	g0352	1	1	0	0	0	0	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	g0353	1	1	0	0	0	0	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	g0354	1	1	0	0	0	0	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	g0355	1	0	0	1	0	0	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	g0356	1	0	0	1	0	0	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	g0357	1	0	0	1	0	0	ASS1	chr9	130439961	130506274
ASS1_chr9_130439961_130506274	0/0	g0358	1	1	0	0	0	0	ASS1	chr9	130439961	130506274
ASTE1_chr3_131008875_131031825	0/1	g0001	83	3	19	49	3	8	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0002	43	8	7	21	2	5	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0003	27	0	4	15	2	6	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0004	23	0	1	22	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0005	22	8	4	0	4	6	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0006	13	0	1	10	0	2	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0007	12	1	4	5	0	2	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0008	11	10	1	0	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0009	9	6	3	0	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0010	8	0	0	7	0	1	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0011	7	7	0	0	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0012	7	1	0	5	0	1	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0013	5	0	0	5	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0014	5	4	1	0	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0015	5	0	1	0	2	2	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0016	4	4	0	0	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0017	4	4	0	0	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0018	4	0	0	4	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0019	3	0	0	3	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0020	3	0	0	3	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0021	3	0	0	2	0	1	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0022	3	0	1	2	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0023	3	3	0	0	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0024	2	2	0	0	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0025	2	1	1	0	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0026	2	1	0	0	0	1	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0027	2	0	2	0	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0028	2	0	0	2	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0029	2	0	0	2	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0030	2	0	0	2	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0031	2	2	0	0	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0032	2	0	0	2	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0033	2	0	0	2	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0034	2	0	0	2	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0035	2	2	0	0	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0036	2	0	0	2	0	0	ASTE1	chr3	131008875	131031825