JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ASTE1_chr3_131008875_131031825	0/0	g0087	1	0	0	0	0	1	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0088	1	0	1	0	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0089	1	0	1	0	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0090	1	0	0	1	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0091	1	0	1	0	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0092	1	0	0	0	0	1	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0093	1	0	0	1	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0094	1	1	0	0	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0095	1	0	0	1	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0096	1	1	0	0	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0097	1	1	0	0	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0098	1	0	1	0	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0099	1	0	1	0	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0100	1	1	0	0	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0101	1	1	0	0	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0102	1	1	0	0	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0103	1	1	0	0	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0104	1	0	0	1	0	0	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	g0105	1	0	0	0	0	1	ASTE1	chr3	131008875	131031825
ASTL_chr2_96117818_96143502	0/0	g0001	51	6	16	20	2	7	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0002	32	0	10	18	0	4	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0003	31	1	5	20	0	5	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0004	28	3	15	6	1	3	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0005	26	22	1	3	0	0	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0006	17	0	0	17	0	0	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0007	15	15	0	0	0	0	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0008	10	10	0	0	0	0	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	1/1	g0009	9	1	2	0	4	0	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0010	7	0	0	7	0	0	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0011	7	0	0	7	0	0	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0012	5	0	0	5	0	0	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0013	5	0	0	5	0	0	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0014	5	0	4	1	0	0	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0015	5	1	0	3	0	1	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0016	4	0	3	0	0	1	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0017	4	4	0	0	0	0	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0018	4	1	3	0	0	0	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0019	4	0	0	4	0	0	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0020	3	0	0	3	0	0	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0021	3	0	0	3	0	0	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0022	2	0	0	2	0	0	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0023	2	2	0	0	0	0	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0024	2	2	0	0	0	0	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0025	2	0	0	1	0	1	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0026	2	0	1	1	0	0	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0027	2	0	0	0	0	2	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0028	2	0	0	0	0	2	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0029	2	0	0	2	0	0	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0030	2	0	0	2	0	0	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	g0031	2	2	0	0	0	0	ASTL	chr2	96117818	96143502