JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ABRAXAS2_chr10_124796819_124841667	0/0	g0253	1	0	0	1	0	0	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	g0254	1	0	0	1	0	0	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	g0255	1	0	0	1	0	0	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	g0256	1	1	0	0	0	0	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	g0257	1	1	0	0	0	0	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	g0258	1	1	0	0	0	0	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	g0259	1	1	0	0	0	0	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	g0260	1	1	0	0	0	0	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	g0261	1	0	0	0	0	1	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	g0262	1	0	0	0	0	1	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	g0263	1	0	1	0	0	0	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	g0264	1	0	0	0	1	0	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	g0265	1	1	0	0	0	0	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	g0266	1	0	0	0	0	1	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	g0267	1	0	0	1	0	0	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	g0268	1	0	0	0	0	1	ABRAXAS2	chr10	124796819	124841667
ABRA_chr8_106754483_106775244	0/0	g0001	106	13	20	55	4	14	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0002	58	0	9	41	1	7	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0003	50	2	4	40	0	4	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0004	31	14	12	0	2	3	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	1/0	g0005	24	0	5	13	1	4	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0006	10	1	5	3	0	1	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0007	9	0	3	0	3	3	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0008	9	8	1	0	0	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0009	8	7	1	0	0	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0010	8	1	7	0	0	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0011	6	0	0	6	0	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0012	6	5	1	0	0	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0013	5	0	0	5	0	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0014	5	5	0	0	0	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0015	5	0	0	5	0	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0016	5	0	2	0	0	3	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0017	4	0	0	4	0	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0018	4	0	0	4	0	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0019	4	4	0	0	0	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0020	3	3	0	0	0	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0021	3	3	0	0	0	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0022	3	3	0	0	0	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0023	3	3	0	0	0	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0024	3	3	0	0	0	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0025	2	0	0	2	0	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0026	2	0	1	1	0	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0027	2	0	0	2	0	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0028	2	0	2	0	0	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0029	2	0	0	0	2	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/1	g0030	2	0	0	1	0	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0031	2	2	0	0	0	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0032	2	0	2	0	0	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0033	2	2	0	0	0	0	ABRA	chr8	106754483	106775244
ABRA_chr8_106754483_106775244	0/0	g0034	2	0	0	2	0	0	ABRA	chr8	106754483	106775244