JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATF2_chr2_175067259_175173203	0/0	g0215	1	0	0	1	0	0	ATF2	chr2	175067259	175173203
ATF2_chr2_175067259_175173203	0/0	g0216	1	0	0	1	0	0	ATF2	chr2	175067259	175173203
ATF2_chr2_175067259_175173203	0/0	g0217	1	1	0	0	0	0	ATF2	chr2	175067259	175173203
ATF2_chr2_175067259_175173203	0/0	g0218	1	1	0	0	0	0	ATF2	chr2	175067259	175173203
ATF2_chr2_175067259_175173203	0/0	g0219	1	1	0	0	0	0	ATF2	chr2	175067259	175173203
ATF2_chr2_175067259_175173203	0/0	g0220	1	1	0	0	0	0	ATF2	chr2	175067259	175173203
ATF3_chr1_212603761_212625775	0/0	g0001	84	3	17	62	1	1	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0002	33	1	7	17	2	6	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0003	32	9	5	12	2	4	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0004	24	0	10	14	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0005	19	4	1	12	0	2	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0006	17	0	3	13	0	1	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0007	17	0	0	17	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0008	16	2	2	10	0	2	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0009	11	10	1	0	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0010	8	5	0	1	0	2	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0011	6	2	0	3	0	1	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	1/0	g0012	6	0	0	5	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0013	6	0	0	6	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/1	g0014	5	0	4	0	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0015	5	4	0	1	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0016	5	0	0	5	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0017	4	0	0	0	4	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0018	4	4	0	0	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0019	4	0	1	0	0	3	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0020	4	2	0	0	0	2	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0021	4	1	0	3	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0022	4	0	4	0	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0023	4	3	1	0	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0024	3	2	1	0	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0025	3	0	2	0	0	1	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0026	3	3	0	0	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0027	3	0	0	3	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0028	3	0	0	3	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0029	3	3	0	0	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0030	3	3	0	0	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0031	3	0	0	3	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0032	2	0	1	0	0	1	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0033	2	2	0	0	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0034	2	0	0	0	0	2	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0035	2	2	0	0	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0036	2	2	0	0	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0037	2	1	1	0	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0038	2	0	0	2	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0039	2	2	0	0	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0040	2	0	0	2	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0041	2	0	0	0	0	2	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0042	2	0	0	0	2	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0043	2	0	1	1	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0044	2	1	1	0	0	0	ATF3	chr1	212603761	212625775