JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATF3_chr1_212603761_212625775	0/0	g0095	1	1	0	0	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0096	1	0	0	1	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0097	1	0	0	1	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0098	1	0	0	1	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0099	1	1	0	0	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0100	1	0	0	1	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0101	1	0	0	1	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0102	1	0	1	0	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0103	1	0	0	1	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0104	1	0	0	1	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0105	1	0	0	0	0	1	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0106	1	0	0	1	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0107	1	0	1	0	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0108	1	0	0	0	0	1	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0109	1	0	0	0	0	1	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0110	1	0	0	1	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0111	1	0	0	1	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0112	1	0	0	1	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0113	1	0	0	1	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0114	1	0	1	0	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0115	1	0	0	0	0	1	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0116	1	1	0	0	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0117	1	0	1	0	0	0	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	g0118	1	0	1	0	0	0	ATF3	chr1	212603761	212625775
ATF4_chr22_39515562_39527683	1/1	g0001	316	73	58	126	14	43	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	g0002	10	9	1	0	0	0	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	g0003	7	2	1	4	0	0	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	g0004	5	0	2	0	2	1	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	g0005	3	3	0	0	0	0	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	g0006	3	0	3	0	0	0	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	g0007	2	2	0	0	0	0	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	g0008	2	0	0	0	2	0	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	g0009	1	0	1	0	0	0	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	g0010	1	1	0	0	0	0	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	g0011	1	1	0	0	0	0	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	g0012	1	1	0	0	0	0	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	g0013	1	1	0	0	0	0	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	g0014	1	1	0	0	0	0	ATF4	chr22	39515562	39527683
ATF5_chr19_49924205_49938935	0/0	g0001	141	22	32	70	5	12	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	g0002	67	7	3	53	0	4	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	g0003	29	0	8	10	2	9	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	g0004	24	4	6	12	0	2	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	g0005	24	5	3	14	0	2	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	g0006	17	2	9	0	2	4	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/1	g0007	12	1	3	2	1	4	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	g0008	10	1	0	9	0	0	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	g0009	9	9	0	0	0	0	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	g0010	9	9	0	0	0	0	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	g0011	9	2	7	0	0	0	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	g0012	8	2	0	4	0	2	ATF5	chr19	49924205	49938935