JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ABR_chr17_998519_1184981	0/0	g0305	1	0	0	1	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0306	1	0	0	1	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0307	1	0	0	1	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0308	1	0	0	1	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0309	1	0	0	1	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0310	1	0	0	1	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0311	1	0	1	0	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0312	1	0	0	1	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0313	1	0	1	0	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0314	1	0	0	1	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0315	1	0	1	0	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0316	1	0	1	0	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0317	1	0	1	0	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0318	1	0	1	0	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0319	1	0	0	1	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0320	1	0	1	0	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0321	1	0	0	1	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0322	1	0	0	1	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0323	1	0	0	1	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0324	1	0	0	1	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0325	1	0	1	0	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0326	1	0	1	0	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0327	1	0	0	0	0	1	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0328	1	0	1	0	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0329	1	0	0	1	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0330	1	0	0	0	0	1	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0331	1	0	0	0	0	1	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0332	1	0	0	1	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0333	1	0	0	1	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0334	1	0	1	0	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0335	1	0	1	0	0	0	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	g0336	1	1	0	0	0	0	ABR	chr17	998519	1184981
ABT1_chr6_26591953_26605739	0/0	g0001	211	50	33	98	7	23	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	1/0	g0002	111	17	32	42	5	14	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	g0003	63	16	5	36	1	5	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/1	g0004	22	9	5	3	1	3	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	g0005	1	0	0	1	0	0	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	g0006	1	0	0	0	0	1	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	g0007	1	0	1	0	0	0	ABT1	chr6	26591953	26605739
ABTB1_chr3_127667952_127685926	0/1	g0001	131	26	25	64	4	11	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	1/0	g0002	80	0	21	38	5	15	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	g0003	27	0	1	24	0	2	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	g0004	22	1	10	2	3	6	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	g0005	17	15	2	0	0	0	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	g0006	14	1	4	6	2	1	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	g0007	8	7	1	0	0	0	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	g0008	8	0	0	8	0	0	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	g0009	7	7	0	0	0	0	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	g0010	6	3	3	0	0	0	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	g0011	6	5	1	0	0	0	ABTB1	chr3	127667952	127685926