JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATF7_chr12_53507054_53631382	0/0	g0323	1	1	0	0	0	0	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	g0324	1	0	0	1	0	0	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	g0325	1	0	0	1	0	0	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	g0326	1	0	0	1	0	0	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	g0327	1	0	0	1	0	0	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	g0328	1	0	0	1	0	0	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	g0329	1	0	0	0	0	1	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	g0330	1	1	0	0	0	0	ATF7	chr12	53507054	53631382
ATG101_chr12_52064978_52082495	1/1	g0001	122	11	25	65	5	14	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0002	112	7	18	70	2	15	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0003	23	21	2	0	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0004	23	21	2	0	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0005	12	1	2	8	0	1	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0006	11	0	0	11	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0007	9	6	1	0	0	2	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0008	9	0	3	0	4	2	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0009	6	0	0	6	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0010	5	0	0	0	1	4	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0011	4	4	0	0	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0012	4	4	0	0	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0013	4	3	1	0	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0014	3	3	0	0	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0015	3	0	0	3	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0016	3	0	3	0	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0017	2	2	0	0	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0018	2	1	1	0	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0019	2	2	0	0	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0020	2	0	0	0	0	2	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0021	2	2	0	0	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0022	2	0	0	2	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0023	2	0	1	1	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0024	1	0	0	1	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0025	1	1	0	0	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0026	1	0	0	1	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0027	1	0	0	1	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0028	1	1	0	0	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0029	1	1	0	0	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0030	1	1	0	0	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0031	1	0	0	0	0	1	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0032	1	0	0	1	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0033	1	0	0	1	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0034	1	0	0	1	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0035	1	0	0	0	1	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0036	1	0	0	0	0	1	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0037	1	1	0	0	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0038	1	0	0	1	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0039	1	0	0	0	1	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0040	1	0	1	0	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0041	1	0	0	1	0	0	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	g0042	1	0	0	1	0	0	ATG101	chr12	52064978	52082495