JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATG16L1_chr2_233246673_233300669	0/0	g0277	1	0	0	1	0	0	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	g0278	1	0	0	1	0	0	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	g0279	1	0	0	1	0	0	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	g0280	1	0	0	1	0	0	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	g0281	1	0	0	1	0	0	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	g0282	1	1	0	0	0	0	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	g0283	1	1	0	0	0	0	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	g0284	1	0	1	0	0	0	ATG16L1	chr2	233246673	233300669
ATG16L2_chr11_72809411_72834635	0/1	g0001	54	0	13	36	1	3	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0002	39	0	4	28	1	6	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0003	35	3	3	28	0	1	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0004	29	1	14	7	4	3	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0005	25	4	9	6	1	5	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0006	17	0	6	4	1	6	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0007	17	0	0	17	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0008	9	9	0	0	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0009	7	0	0	7	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0010	7	1	4	0	0	2	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0011	7	0	7	0	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0012	6	0	3	0	2	1	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0013	6	6	0	0	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0014	6	0	0	6	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0015	5	5	0	0	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0016	5	5	0	0	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0017	5	5	0	0	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0018	5	0	1	4	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0019	4	1	0	3	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0020	3	3	0	0	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0021	3	0	0	3	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0022	3	1	0	2	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0023	3	3	0	0	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0024	3	0	0	3	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0025	3	0	2	0	0	1	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0026	3	0	0	3	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0027	3	3	0	0	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0028	3	3	0	0	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0029	3	0	1	0	1	1	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0030	3	0	0	0	1	2	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0031	2	0	0	0	0	2	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0032	2	0	0	0	0	2	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0033	2	2	0	0	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0034	2	0	0	2	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0035	2	0	0	2	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0036	2	1	1	0	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0037	2	2	0	0	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0038	2	0	2	0	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0039	2	1	0	0	1	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0040	2	2	0	0	0	0	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0041	2	0	0	0	0	2	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	g0042	2	0	0	2	0	0	ATG16L2	chr11	72809411	72834635