JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATG4D_chr19_10538904_10558418	0/0	g0212	1	0	1	0	0	0	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	g0213	1	0	0	0	0	1	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	g0214	1	1	0	0	0	0	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	g0215	1	0	0	0	1	0	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	g0216	1	1	0	0	0	0	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	g0217	1	1	0	0	0	0	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	g0218	1	0	0	0	0	1	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	g0219	1	0	0	1	0	0	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	g0220	1	0	0	1	0	0	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	g0221	1	1	0	0	0	0	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	g0222	1	1	0	0	0	0	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	g0223	1	1	0	0	0	0	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	g0224	1	1	0	0	0	0	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	g0225	1	1	0	0	0	0	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	g0226	1	1	0	0	0	0	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	g0227	1	0	0	0	0	1	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	g0228	1	0	1	0	0	0	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	g0229	1	1	0	0	0	0	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	g0230	1	1	0	0	0	0	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	g0231	1	1	0	0	0	0	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	g0232	1	1	0	0	0	0	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	g0233	1	1	0	0	0	0	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	g0234	1	1	0	0	0	0	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	g0235	1	1	0	0	0	0	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	g0236	1	0	0	1	0	0	ATG4D	chr19	10538904	10558418
ATG5_chr6_106179476_106330760	0/0	g0001	3	0	0	3	0	0	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	g0002	2	0	0	0	2	0	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	g0003	2	0	0	2	0	0	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	g0004	2	0	0	0	1	1	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	g0005	2	0	2	0	0	0	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	g0006	2	2	0	0	0	0	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	g0007	2	0	0	2	0	0	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	g0008	2	0	0	2	0	0	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	g0009	2	0	0	2	0	0	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	g0010	1	1	0	0	0	0	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	g0011	1	1	0	0	0	0	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	g0012	1	1	0	0	0	0	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	g0013	1	1	0	0	0	0	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	g0014	1	1	0	0	0	0	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	g0015	1	0	0	0	1	0	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	g0016	1	0	0	0	1	0	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	g0017	1	1	0	0	0	0	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	g0018	1	1	0	0	0	0	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	g0019	1	1	0	0	0	0	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	g0020	1	0	0	1	0	0	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	g0021	1	0	0	1	0	0	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	g0022	1	0	0	1	0	0	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	g0023	1	0	0	1	0	0	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	g0024	1	1	0	0	0	0	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	g0025	1	0	1	0	0	0	ATG5	chr6	106179476	106330760