JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATG7_chr3_11267397_11562665	0/0	g0278	1	1	0	0	0	0	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	g0279	1	1	0	0	0	0	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	g0280	1	1	0	0	0	0	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	g0281	1	1	0	0	0	0	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	g0282	1	0	0	0	1	0	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	g0283	1	0	1	0	0	0	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	g0284	1	0	1	0	0	0	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	g0285	1	0	1	0	0	0	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	g0286	1	0	1	0	0	0	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	g0287	1	0	1	0	0	0	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	g0288	1	0	0	0	0	1	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	g0289	1	0	1	0	0	0	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	g0290	1	1	0	0	0	0	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	g0291	1	1	0	0	0	0	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	g0292	1	1	0	0	0	0	ATG7	chr3	11267397	11562665
ATG9A_chr2_219214380_219234636	0/1	g0001	126	15	26	56	10	18	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0002	22	0	0	21	0	1	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0003	18	1	8	8	0	1	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0004	16	0	10	0	4	2	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0005	12	0	12	0	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0006	10	10	0	0	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0007	9	0	0	9	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	1/0	g0008	8	6	1	0	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0009	8	0	2	6	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0010	5	5	0	0	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0011	5	4	1	0	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0012	5	2	0	3	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0013	5	5	0	0	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0014	4	0	1	3	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0015	4	0	0	4	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0016	4	1	3	0	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0017	4	4	0	0	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0018	3	3	0	0	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0019	3	0	2	0	0	1	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0020	3	3	0	0	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0021	2	0	0	2	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0022	2	2	0	0	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0023	2	2	0	0	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0024	2	2	0	0	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0025	2	2	0	0	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0026	2	2	0	0	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0027	2	2	0	0	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0028	2	0	0	2	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0029	2	0	0	2	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0030	2	0	0	2	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0031	2	2	0	0	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0032	2	0	0	2	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0033	2	0	2	0	0	0	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0034	2	0	0	0	0	2	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	g0035	2	0	0	0	0	2	ATG9A	chr2	219214380	219234636