JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATG9B_chr7_151010151_151029494	0/0	g0008	10	0	0	9	0	1	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0009	10	1	1	2	0	6	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0010	10	1	4	1	0	4	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/1	g0011	10	1	3	0	2	3	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0012	9	0	0	9	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0013	9	0	1	8	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0014	8	8	0	0	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	1/0	g0015	8	0	4	0	2	1	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0016	7	0	0	7	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0017	7	1	6	0	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0018	7	0	0	7	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0019	6	0	0	6	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0020	6	0	0	5	0	1	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0021	6	0	0	6	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0022	6	0	0	0	0	6	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0023	6	6	0	0	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0024	5	4	1	0	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0025	5	0	0	5	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0026	5	0	2	0	2	1	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0027	5	0	3	0	1	1	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0028	5	0	0	5	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0029	4	0	4	0	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0030	4	0	0	4	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0031	3	0	0	3	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0032	3	0	0	3	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0033	3	1	2	0	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0034	3	0	3	0	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0035	2	2	0	0	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0036	2	0	0	2	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0037	2	2	0	0	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0038	2	2	0	0	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0039	2	0	0	0	0	2	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0040	2	0	0	2	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0041	2	0	0	2	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0042	2	0	2	0	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0043	2	0	0	2	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0044	2	2	0	0	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0045	2	1	1	0	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0046	2	0	0	2	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0047	2	0	0	2	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0048	2	0	0	2	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0049	2	0	0	2	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0050	2	2	0	0	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0051	2	2	0	0	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0052	2	0	0	0	0	2	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0053	2	0	2	0	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0054	2	1	0	0	1	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0055	2	0	0	2	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0056	2	0	0	2	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0057	2	2	0	0	0	0	ATG9B	chr7	151010151	151029494