JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATG9B_chr7_151010151_151029494	0/0	g0158	1	0	0	1	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0159	1	0	0	1	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0160	1	0	1	0	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0161	1	0	1	0	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0162	1	1	0	0	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0163	1	0	0	0	1	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0164	1	0	0	0	1	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0165	1	0	1	0	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0166	1	1	0	0	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0167	1	0	0	0	0	1	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0168	1	0	0	0	1	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0169	1	0	0	0	0	1	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0170	1	0	0	0	0	1	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0171	1	0	0	1	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0172	1	0	0	1	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0173	1	0	0	1	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0174	1	0	0	1	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0175	1	0	0	0	0	1	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0176	1	1	0	0	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0177	1	0	0	1	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0178	1	0	0	1	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0179	1	1	0	0	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0180	1	0	0	1	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0181	1	1	0	0	0	0	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	g0182	1	0	0	0	0	1	ATG9B	chr7	151010151	151029494
ATIC_chr2_215307059_215354764	0/0	g0001	35	0	6	24	1	4	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	g0002	26	0	4	21	0	1	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	g0003	12	0	3	2	1	6	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	g0004	11	10	0	0	0	1	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	g0005	7	1	5	0	1	0	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	g0006	7	7	0	0	0	0	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	g0007	4	0	0	4	0	0	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	g0008	4	0	0	4	0	0	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	g0009	4	0	1	3	0	0	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	g0010	4	0	1	3	0	0	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	g0011	4	0	0	4	0	0	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	g0012	4	4	0	0	0	0	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	g0013	3	0	0	3	0	0	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	g0014	3	3	0	0	0	0	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	g0015	3	0	0	3	0	0	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	g0016	3	0	0	0	0	3	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	g0017	3	0	1	1	0	1	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	g0018	3	0	0	3	0	0	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	g0019	2	2	0	0	0	0	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	g0020	2	0	2	0	0	0	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	g0021	2	0	1	1	0	0	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	g0022	2	0	2	0	0	0	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	g0023	2	0	0	2	0	0	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	g0024	2	2	0	0	0	0	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	g0025	2	0	0	0	0	2	ATIC	chr2	215307059	215354764