JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATL3_chr11_63619087_63676376	0/0	g0208	1	0	1	0	0	0	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	g0209	1	1	0	0	0	0	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	g0210	1	0	0	0	0	1	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	g0211	1	1	0	0	0	0	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	g0212	1	0	1	0	0	0	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	g0213	1	0	0	0	0	1	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	g0214	1	0	0	0	0	1	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	g0215	1	1	0	0	0	0	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	g0216	1	1	0	0	0	0	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	g0217	1	1	0	0	0	0	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	g0218	1	0	0	0	0	1	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	g0219	1	1	0	0	0	0	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	g0220	1	0	1	0	0	0	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	g0221	1	0	0	0	0	1	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	g0222	1	0	1	0	0	0	ATL3	chr11	63619087	63676376
ATMIN_chr16_81030842_81052350	0/1	g0001	209	29	46	107	7	19	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0002	56	1	4	47	0	4	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0003	17	2	1	14	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0004	11	6	4	0	1	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0005	8	8	0	0	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0006	7	0	0	7	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0007	5	4	1	0	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0008	4	0	2	0	2	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	1/0	g0009	4	2	1	0	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0010	3	0	1	1	0	1	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0011	3	3	0	0	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0012	3	3	0	0	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0013	3	3	0	0	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0014	3	0	2	0	0	1	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0015	2	2	0	0	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0016	2	2	0	0	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0017	2	2	0	0	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0018	2	1	1	0	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0019	2	2	0	0	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0020	2	0	0	0	0	2	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0021	2	0	0	2	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0022	1	0	1	0	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0023	1	1	0	0	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0024	1	0	0	1	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0025	1	1	0	0	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0026	1	1	0	0	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0027	1	1	0	0	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0028	1	1	0	0	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0029	1	0	0	1	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0030	1	0	0	0	0	1	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0031	1	0	0	1	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0032	1	1	0	0	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0033	1	1	0	0	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0034	1	1	0	0	0	0	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	g0035	1	1	0	0	0	0	ATMIN	chr16	81030842	81052350