JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATM_chr11_108218067_108374102	0/0	g0273	1	0	0	1	0	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0274	1	0	0	0	0	1	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0275	1	0	0	0	0	1	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0276	1	0	0	1	0	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0277	1	0	0	1	0	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0278	1	0	0	1	0	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0279	1	0	1	0	0	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0280	1	0	0	1	0	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0281	1	0	0	0	1	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0282	1	0	0	0	0	1	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0283	1	0	0	1	0	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0284	1	0	0	0	1	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0285	1	1	0	0	0	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0286	1	1	0	0	0	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0287	1	0	0	1	0	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0288	1	0	0	1	0	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0289	1	0	0	1	0	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0290	1	1	0	0	0	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0291	1	0	1	0	0	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0292	1	0	0	1	0	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0293	1	1	0	0	0	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0294	1	0	0	0	0	1	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0295	1	0	0	0	0	1	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0296	1	0	1	0	0	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0297	1	0	1	0	0	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0298	1	0	0	1	0	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0299	1	0	0	1	0	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0300	1	0	0	1	0	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0301	1	1	0	0	0	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0302	1	0	0	0	1	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0303	1	0	0	1	0	0	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	g0304	1	1	0	0	0	0	ATM	chr11	108218067	108374102
ATN1_chr12_6922959_6947321	0/1	g0001	51	14	9	20	4	3	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0002	40	0	1	35	0	4	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0003	32	2	7	14	2	7	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0004	26	2	5	13	2	4	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0005	24	6	9	1	3	5	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0006	8	0	1	7	0	0	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0007	8	0	0	8	0	0	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0008	7	0	0	7	0	0	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0009	7	2	1	4	0	0	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0010	6	0	0	5	0	1	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0011	6	6	0	0	0	0	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0012	6	0	2	4	0	0	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0013	6	3	0	3	0	0	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0014	6	0	4	0	0	2	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0015	6	0	2	4	0	0	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0016	5	1	1	3	0	0	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0017	4	4	0	0	0	0	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0018	4	4	0	0	0	0	ATN1	chr12	6922959	6947321