JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATN1_chr12_6922959_6947321	0/0	g0119	1	0	0	0	0	1	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0120	1	0	1	0	0	0	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0121	1	0	0	1	0	0	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0122	1	0	1	0	0	0	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0123	1	1	0	0	0	0	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0124	1	1	0	0	0	0	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0125	1	1	0	0	0	0	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0126	1	0	0	1	0	0	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0127	1	0	0	1	0	0	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0128	1	0	0	1	0	0	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0129	1	0	0	1	0	0	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0130	1	0	0	0	0	1	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	g0131	1	1	0	0	0	0	ATN1	chr12	6922959	6947321
ATOH1_chr4_93823753_93835964	1/1	g0000	458	92	84	216	18	46	ATOH1	chr4	93823753	93835964
ATOH7_chr10_68225595_68237113	1/1	g0000	386	96	70	160	18	40	ATOH7	chr10	68225595	68237113
ATOH8_chr2_85748991_85796383	0/0	g0001	12	0	0	12	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0002	6	0	0	6	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0003	5	0	0	5	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0004	4	0	0	4	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0005	4	0	4	0	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0006	3	0	2	0	1	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0007	3	3	0	0	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0008	3	0	1	0	2	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0009	3	0	0	3	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0010	3	0	0	3	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0011	3	0	0	2	0	1	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0012	3	3	0	0	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0013	2	1	1	0	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0014	2	0	0	2	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0015	2	2	0	0	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0016	2	2	0	0	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0017	2	0	2	0	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0018	2	1	1	0	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0019	2	0	0	2	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0020	2	0	0	2	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0021	2	0	0	0	2	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0022	2	2	0	0	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0023	2	0	0	0	0	2	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0024	2	0	1	0	0	1	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0025	2	0	2	0	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0026	2	0	2	0	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0027	2	1	0	1	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0028	2	0	0	2	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0029	2	0	2	0	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0030	2	0	2	0	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0031	2	0	0	2	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0032	2	0	0	2	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0033	2	2	0	0	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0034	2	2	0	0	0	0	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	g0035	2	0	1	1	0	0	ATOH8	chr2	85748991	85796383