JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATOSA_chr15_52576321_52684388	0/0	g0324	1	0	0	1	0	0	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	g0325	1	0	0	1	0	0	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	g0326	1	0	1	0	0	0	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	g0327	1	0	0	1	0	0	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	g0328	1	0	1	0	0	0	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	g0329	1	0	0	1	0	0	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	g0330	1	0	0	1	0	0	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	g0331	1	0	1	0	0	0	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	g0332	1	0	0	0	0	1	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	g0333	1	0	1	0	0	0	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	g0334	1	0	1	0	0	0	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	g0335	1	1	0	0	0	0	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	g0336	1	1	0	0	0	0	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	g0337	1	1	0	0	0	0	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	g0338	1	1	0	0	0	0	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	g0339	1	1	0	0	0	0	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	g0340	1	1	0	0	0	0	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	g0341	1	1	0	0	0	0	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	g0342	1	0	0	1	0	0	ATOSA	chr15	52576321	52684388
ATOSB_chr9_35099117_35120862	0/1	g0001	57	6	7	38	3	2	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0002	24	4	9	5	1	5	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0003	22	0	0	20	2	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0004	21	0	18	0	1	2	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0005	18	0	0	18	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0006	18	0	1	17	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0007	16	0	0	15	0	1	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0008	14	0	6	0	4	4	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0009	10	0	0	10	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0010	10	4	2	0	0	4	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0011	7	2	0	4	0	1	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	1/0	g0012	7	6	0	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0013	6	4	2	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0014	5	0	1	1	0	3	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0015	4	0	0	4	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0016	4	0	1	3	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0017	4	0	0	4	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0018	4	4	0	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0019	3	2	1	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0020	3	0	0	3	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0021	3	0	0	3	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0022	3	3	0	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0023	3	0	0	3	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0024	3	0	0	3	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0025	3	0	0	0	0	3	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0026	3	0	1	0	0	2	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0027	3	1	2	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0028	3	3	0	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0029	3	1	0	2	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0030	2	2	0	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0031	2	0	0	0	0	2	ATOSB	chr9	35099117	35120862