JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATOSB_chr9_35099117_35120862	0/0	g0132	1	1	0	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0133	1	1	0	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0134	1	1	0	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0135	1	0	0	0	0	1	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0136	1	0	1	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0137	1	1	0	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0138	1	1	0	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0139	1	1	0	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0140	1	1	0	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0141	1	0	0	1	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0142	1	0	1	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0143	1	0	1	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0144	1	0	1	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0145	1	0	1	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0146	1	0	1	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0147	1	1	0	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0148	1	0	0	0	0	1	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0149	1	1	0	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0150	1	0	1	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0151	1	1	0	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0152	1	1	0	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0153	1	1	0	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0154	1	1	0	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0155	1	1	0	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0156	1	1	0	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0157	1	1	0	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0158	1	1	0	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0159	1	1	0	0	0	0	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	g0160	1	0	0	1	0	0	ATOSB	chr9	35099117	35120862
ATOX1_chr5_151737822_151763631	0/0	g0001	52	2	13	29	1	7	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	g0002	46	0	10	25	2	9	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	g0003	27	15	10	0	2	0	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	g0004	11	1	4	6	0	0	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	g0005	9	7	0	1	1	0	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	g0006	8	5	1	2	0	0	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	g0007	7	5	2	0	0	0	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	g0008	6	0	3	2	0	1	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	g0009	5	0	0	5	0	0	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	g0010	5	1	3	0	1	0	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	g0011	5	0	2	2	0	1	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	g0012	4	0	0	4	0	0	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	g0013	4	1	0	0	2	1	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	g0014	4	0	1	3	0	0	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	g0015	4	4	0	0	0	0	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	g0016	3	3	0	0	0	0	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	g0017	3	3	0	0	0	0	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	g0018	3	0	0	3	0	0	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	g0019	3	0	2	1	0	0	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	g0020	3	0	0	3	0	0	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	g0021	3	0	0	3	0	0	ATOX1	chr5	151737822	151763631