JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATP12A_chr13_24675408_24717472	0/0	g0301	1	0	0	0	0	1	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0302	1	0	0	0	0	1	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0303	1	0	1	0	0	0	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0304	1	0	1	0	0	0	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0305	1	0	0	1	0	0	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0306	1	0	0	0	0	1	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0307	1	0	1	0	0	0	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0308	1	0	0	1	0	0	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/1	g0309	1	0	0	0	0	0	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0310	1	0	0	0	1	0	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0311	1	0	0	0	0	1	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0312	1	0	0	1	0	0	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0313	1	0	0	1	0	0	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0314	1	0	0	0	0	1	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0315	1	0	0	0	0	1	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0316	1	0	1	0	0	0	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0317	1	1	0	0	0	0	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0318	1	1	0	0	0	0	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0319	1	0	1	0	0	0	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0320	1	1	0	0	0	0	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0321	1	1	0	0	0	0	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0322	1	0	0	1	0	0	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0323	1	0	0	1	0	0	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0324	1	0	0	0	0	1	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0325	1	1	0	0	0	0	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0326	1	0	1	0	0	0	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0327	1	1	0	0	0	0	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0328	1	1	0	0	0	0	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0329	1	1	0	0	0	0	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0330	1	1	0	0	0	0	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	g0331	1	0	0	1	0	0	ATP12A	chr13	24675408	24717472
ATP13A1_chr19_19640198_19668676	0/0	g0001	61	14	9	30	0	8	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	g0002	27	6	5	10	1	5	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	g0003	11	0	1	9	0	1	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	g0004	11	0	0	10	1	0	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	g0005	11	11	0	0	0	0	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	g0006	11	0	4	0	1	6	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	g0007	10	0	6	4	0	0	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	g0008	8	1	2	2	2	1	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	g0009	8	0	1	5	2	0	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	g0010	7	5	1	1	0	0	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	g0011	6	0	0	6	0	0	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	g0012	5	4	1	0	0	0	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	g0013	5	0	1	3	0	1	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	g0014	4	4	0	0	0	0	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	g0015	4	0	0	4	0	0	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	g0016	4	0	0	4	0	0	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	g0017	4	0	3	0	1	0	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	g0018	4	2	0	1	0	1	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	g0019	4	0	4	0	0	0	ATP13A1	chr19	19640198	19668676