JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATP13A2_chr1_16980958_17016928	0/0	g0262	1	0	1	0	0	0	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0263	1	1	0	0	0	0	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0264	1	1	0	0	0	0	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0265	1	1	0	0	0	0	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0266	1	1	0	0	0	0	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0267	1	1	0	0	0	0	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0268	1	1	0	0	0	0	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0269	1	1	0	0	0	0	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0270	1	1	0	0	0	0	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0271	1	0	1	0	0	0	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0272	1	1	0	0	0	0	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0273	1	1	0	0	0	0	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0274	1	1	0	0	0	0	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0275	1	1	0	0	0	0	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0276	1	1	0	0	0	0	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0277	1	1	0	0	0	0	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0278	1	1	0	0	0	0	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0279	1	1	0	0	0	0	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0280	1	1	0	0	0	0	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0281	1	1	0	0	0	0	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0282	1	0	0	1	0	0	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0283	1	0	1	0	0	0	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0284	1	0	0	1	0	0	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0285	1	0	0	1	0	0	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0286	1	0	0	0	0	1	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	g0287	1	0	1	0	0	0	ATP13A2	chr1	16980958	17016928
ATP13A3_chr3_194397677_194492002	0/0	g0001	1	0	0	1	0	0	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	g0002	1	0	1	0	0	0	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	g0003	1	0	1	0	0	0	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	g0004	1	1	0	0	0	0	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	g0005	1	0	1	0	0	0	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	g0006	1	0	1	0	0	0	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	g0007	1	1	0	0	0	0	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	g0008	1	0	0	1	0	0	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	g0009	1	1	0	0	0	0	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	g0010	1	1	0	0	0	0	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	g0011	1	1	0	0	0	0	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	g0012	1	1	0	0	0	0	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	g0013	1	1	0	0	0	0	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	g0014	1	1	0	0	0	0	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	g0015	1	1	0	0	0	0	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	g0016	1	0	0	0	0	1	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	g0017	1	0	0	0	0	1	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	g0018	1	0	1	0	0	0	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	g0019	1	0	0	0	0	1	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	g0020	1	0	0	0	0	1	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	g0021	1	0	0	0	1	0	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	g0022	1	0	0	0	0	1	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	g0023	1	0	0	1	0	0	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	g0024	1	0	1	0	0	0	ATP13A3	chr3	194397677	194492002