JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATP1A1_chr1_116368244_116409774	0/0	g0155	1	0	0	0	0	1	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	g0156	1	1	0	0	0	0	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	g0157	1	1	0	0	0	0	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	g0158	1	1	0	0	0	0	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	g0159	1	1	0	0	0	0	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	g0160	1	1	0	0	0	0	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	g0161	1	1	0	0	0	0	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	g0162	1	1	0	0	0	0	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	g0163	1	1	0	0	0	0	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	g0164	1	1	0	0	0	0	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	g0165	1	1	0	0	0	0	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	g0166	1	0	1	0	0	0	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	g0167	1	0	0	1	0	0	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	g0168	1	0	0	1	0	0	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	g0169	1	1	0	0	0	0	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	g0170	1	0	0	1	0	0	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	g0171	1	0	1	0	0	0	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	g0172	1	0	0	0	0	1	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	g0173	1	0	0	1	0	0	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	g0174	1	0	0	1	0	0	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	g0175	1	1	0	0	0	0	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	g0176	1	1	0	0	0	0	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	g0177	1	1	0	0	0	0	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	g0178	1	0	0	1	0	0	ATP1A1	chr1	116368244	116409774
ATP1A2_chr1_160110759_160148591	0/0	g0001	26	3	0	21	0	2	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0002	8	0	2	6	0	0	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0003	7	0	3	4	0	0	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0004	6	0	3	1	0	2	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0005	6	1	2	0	2	1	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0006	6	0	1	5	0	0	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0007	6	0	2	0	2	2	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0008	5	0	0	5	0	0	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0009	5	1	0	2	0	2	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0010	5	0	0	5	0	0	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0011	4	0	1	0	2	1	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0012	4	0	0	4	0	0	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0013	4	0	0	4	0	0	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0014	4	0	1	1	0	2	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0015	4	4	0	0	0	0	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0016	4	0	2	2	0	0	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0017	3	0	0	3	0	0	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0018	3	1	0	1	0	1	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0019	3	0	1	2	0	0	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0020	3	0	1	1	0	1	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0021	3	0	2	1	0	0	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0022	3	1	0	2	0	0	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0023	3	0	0	3	0	0	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0024	3	0	0	3	0	0	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0025	3	0	3	0	0	0	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	g0026	2	0	0	0	2	0	ATP1A2	chr1	160110759	160148591