JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATP1A4_chr1_160146603_160191980	0/0	g0374	1	0	0	1	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0375	1	0	0	1	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0376	1	0	1	0	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0377	1	0	0	1	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0378	1	0	0	1	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0379	1	0	0	1	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0380	1	0	1	0	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0381	1	0	1	0	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0382	1	0	1	0	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0383	1	0	1	0	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0384	1	0	1	0	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0385	1	0	1	0	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0386	1	0	0	1	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0387	1	0	0	1	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0388	1	0	0	1	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0389	1	0	0	1	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0390	1	0	0	1	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0391	1	0	0	1	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0392	1	0	0	0	1	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0393	1	0	1	0	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0394	1	0	1	0	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0395	1	1	0	0	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0396	1	0	1	0	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0397	1	0	1	0	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0398	1	0	0	1	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0399	1	0	0	1	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0400	1	1	0	0	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0401	1	1	0	0	0	0	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	g0402	1	1	0	0	0	0	ATP1A4	chr1	160146603	160191980
ATP1B1_chr1_169101690_169137719	0/0	g0001	15	0	4	11	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0002	9	1	1	7	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0003	5	0	0	5	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0004	4	0	0	4	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0005	4	0	0	4	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0006	3	0	2	0	1	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0007	3	0	0	3	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0008	3	0	0	3	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0009	3	0	3	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0010	3	0	0	3	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0011	3	0	2	1	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0012	3	0	2	1	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0013	2	0	2	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0014	2	0	0	2	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0015	2	0	0	1	0	1	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0016	2	2	0	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0017	2	0	1	0	0	1	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0018	2	0	0	0	2	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0019	2	0	0	2	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0020	2	2	0	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0021	2	0	0	0	0	2	ATP1B1	chr1	169101690	169137719