JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATP1B1_chr1_169101690_169137719	0/0	g0322	1	1	0	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0323	1	1	0	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0324	1	1	0	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0325	1	1	0	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0326	1	1	0	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0327	1	0	1	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0328	1	1	0	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0329	1	1	0	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0330	1	1	0	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0331	1	1	0	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0332	1	1	0	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0333	1	1	0	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0334	1	0	1	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0335	1	0	1	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0336	1	1	0	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0337	1	1	0	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0338	1	1	0	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0339	1	1	0	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0340	1	1	0	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0341	1	1	0	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0342	1	1	0	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0343	1	1	0	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0344	1	1	0	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0345	1	1	0	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	g0346	1	1	0	0	0	0	ATP1B1	chr1	169101690	169137719
ATP1B2_chr17_7645926_7662770	0/1	g0001	172	12	43	96	7	13	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	g0002	147	33	28	77	5	4	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	g0003	39	4	4	14	2	15	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	g0004	17	0	5	4	2	6	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	g0005	13	13	0	0	0	0	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	g0006	7	7	0	0	0	0	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	g0007	5	5	0	0	0	0	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	g0008	5	4	1	0	0	0	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	g0009	4	4	0	0	0	0	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	g0010	4	0	1	2	0	1	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	g0011	3	0	0	0	0	3	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	g0012	2	0	2	0	0	0	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	g0013	2	2	0	0	0	0	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	g0014	2	2	0	0	0	0	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	g0015	2	2	0	0	0	0	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	g0016	2	0	0	2	0	0	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	g0017	1	1	0	0	0	0	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	g0018	1	0	0	1	0	0	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	g0019	1	1	0	0	0	0	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	g0020	1	0	0	0	0	1	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	g0021	1	0	0	1	0	0	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	g0022	1	0	1	0	0	0	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	g0023	1	1	0	0	0	0	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	g0024	1	1	0	0	0	0	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	g0025	1	0	0	0	0	1	ATP1B2	chr17	7645926	7662770