JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATP2C2_chr16_84363538_84469187	0/0	g0413	1	0	0	1	0	0	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	g0414	1	0	0	1	0	0	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	g0415	1	0	0	1	0	0	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	g0416	1	0	0	1	0	0	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	g0417	1	0	0	1	0	0	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	g0418	1	0	0	1	0	0	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	g0419	1	0	0	1	0	0	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	g0420	1	0	0	1	0	0	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	g0421	1	0	0	1	0	0	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	g0422	1	0	0	1	0	0	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	g0423	1	0	0	1	0	0	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	g0424	1	0	0	1	0	0	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	g0425	1	0	0	1	0	0	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	g0426	1	0	0	1	0	0	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	g0427	1	0	0	1	0	0	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	g0428	1	0	0	1	0	0	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	g0429	1	0	0	1	0	0	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	g0430	1	0	0	1	0	0	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	g0431	1	0	0	1	0	0	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	g0432	1	0	0	1	0	0	ATP2C2	chr16	84363538	84469187
ATP4A_chr19_35545031_35568658	0/0	g0001	24	0	6	18	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0002	17	2	0	15	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	1/0	g0003	12	0	1	9	0	1	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0004	11	3	8	0	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/1	g0005	11	0	7	1	0	2	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0006	11	8	0	0	0	3	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0007	11	0	6	5	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0008	9	0	1	7	1	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0009	8	0	2	6	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0010	8	4	2	0	0	2	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0011	7	0	1	0	2	4	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0012	6	6	0	0	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0013	6	1	0	4	0	1	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0014	5	0	0	5	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0015	5	0	0	4	0	1	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0016	5	0	0	5	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0017	5	0	0	5	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0018	5	2	0	3	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0019	5	0	0	5	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0020	4	0	0	4	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0021	4	0	1	0	1	2	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0022	4	0	0	0	0	4	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0023	4	4	0	0	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0024	4	0	0	4	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0025	4	4	0	0	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0026	3	0	0	3	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0027	3	0	0	2	0	1	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0028	3	3	0	0	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0029	3	0	2	1	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0030	3	0	0	3	0	0	ATP4A	chr19	35545031	35568658