JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATP4A_chr19_35545031_35568658	0/0	g0181	1	0	0	0	0	1	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0182	1	1	0	0	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0183	1	0	0	1	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0184	1	0	0	1	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0185	1	0	0	1	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0186	1	0	0	1	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0187	1	0	1	0	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0188	1	0	0	1	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0189	1	0	0	1	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0190	1	0	0	1	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0191	1	0	0	1	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0192	1	0	0	1	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0193	1	0	0	1	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0194	1	0	0	1	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0195	1	0	0	1	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0196	1	0	0	1	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0197	1	0	1	0	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0198	1	1	0	0	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0199	1	1	0	0	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0200	1	1	0	0	0	0	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	g0201	1	1	0	0	0	0	ATP4A	chr19	35545031	35568658
ATP4B_chr13_113643804_113663198	0/0	g0001	49	0	11	32	1	5	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/1	g0002	44	2	11	22	3	5	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0003	19	0	0	18	0	1	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0004	12	0	3	6	1	2	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0005	12	0	0	12	0	0	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0006	11	1	8	0	1	1	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0007	9	0	0	9	0	0	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0008	7	0	5	0	1	1	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0009	7	0	0	7	0	0	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0010	5	0	5	0	0	0	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0011	5	0	3	1	0	1	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0012	5	0	3	1	0	1	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0013	5	0	2	3	0	0	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0014	4	1	0	3	0	0	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0015	4	1	3	0	0	0	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0016	4	4	0	0	0	0	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0017	4	0	1	3	0	0	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0018	4	0	2	2	0	0	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0019	4	0	0	0	0	4	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0020	3	0	0	3	0	0	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0021	3	0	0	3	0	0	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0022	3	0	2	0	1	0	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0023	3	0	0	3	0	0	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0024	3	0	0	0	0	3	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0025	3	0	2	1	0	0	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0026	3	0	0	0	0	3	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0027	3	0	0	3	0	0	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0028	2	2	0	0	0	0	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	g0029	2	0	0	2	0	0	ATP4B	chr13	113643804	113663198