JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATP5F1D_chr19_1236751_1249825	0/0	g0008	1	0	0	0	0	1	ATP5F1D	chr19	1236751	1249825
ATP5F1D_chr19_1236751_1249825	0/0	g0009	1	0	0	0	0	1	ATP5F1D	chr19	1236751	1249825
ATP5F1D_chr19_1236751_1249825	0/0	g0010	1	1	0	0	0	0	ATP5F1D	chr19	1236751	1249825
ATP5F1D_chr19_1236751_1249825	0/0	g0011	1	0	1	0	0	0	ATP5F1D	chr19	1236751	1249825
ATP5F1D_chr19_1236751_1249825	0/0	g0012	1	1	0	0	0	0	ATP5F1D	chr19	1236751	1249825
ATP5F1D_chr19_1236751_1249825	0/0	g0013	1	0	0	0	1	0	ATP5F1D	chr19	1236751	1249825
ATP5F1D_chr19_1236751_1249825	0/0	g0014	1	1	0	0	0	0	ATP5F1D	chr19	1236751	1249825
ATP5F1D_chr19_1236751_1249825	0/0	g0015	1	0	0	1	0	0	ATP5F1D	chr19	1236751	1249825
ATP5F1D_chr19_1236751_1249825	0/0	g0016	1	1	0	0	0	0	ATP5F1D	chr19	1236751	1249825
ATP5F1D_chr19_1236751_1249825	0/0	g0017	1	0	0	1	0	0	ATP5F1D	chr19	1236751	1249825
ATP5F1D_chr19_1236751_1249825	0/0	g0018	1	0	0	1	0	0	ATP5F1D	chr19	1236751	1249825
ATP5F1E_chr20_59020475_59037335	0/0	g0001	115	14	22	63	1	15	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	1/0	g0002	67	26	14	17	4	5	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0003	60	12	13	22	3	10	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0004	57	2	15	30	5	5	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0005	21	0	0	21	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0006	7	0	3	0	2	2	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0007	4	4	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0008	4	0	0	0	0	4	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0009	3	0	2	1	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0010	3	0	2	1	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0011	3	0	0	3	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0012	3	3	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0013	2	2	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0014	2	2	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0015	2	0	2	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0016	2	1	1	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0017	2	0	0	2	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0018	2	2	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0019	2	2	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0020	2	2	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0021	2	2	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/1	g0022	1	0	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0023	1	1	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0024	1	0	0	1	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0025	1	0	0	1	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0026	1	1	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0027	1	1	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0028	1	1	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0029	1	1	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0030	1	0	0	0	0	1	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0031	1	1	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0032	1	0	0	0	0	1	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0033	1	0	0	1	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0034	1	0	0	0	0	1	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0035	1	0	0	0	0	1	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0036	1	0	0	1	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0037	1	1	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0038	1	1	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0039	1	0	0	1	0	0	ATP5F1E	chr20	59020475	59037335