JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATP5F1E_chr20_59020475_59037335	0/0	g0040	1	0	1	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0041	1	1	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0042	1	0	0	1	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0043	1	0	0	0	0	1	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0044	1	1	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0045	1	0	1	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0046	1	0	1	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0047	1	0	0	1	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0048	1	1	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0049	1	1	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0050	1	0	0	0	1	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0051	1	0	1	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0052	1	1	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0053	1	0	0	1	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0054	1	0	0	1	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0055	1	0	0	1	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0056	1	1	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0057	1	1	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0058	1	0	0	0	0	1	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0059	1	0	0	0	0	1	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	g0060	1	1	0	0	0	0	ATP5F1E	chr20	59020475	59037335
ATP5IF1_chr1_28231124_28243100	1/1	g0001	154	25	46	58	6	17	ATP5IF1	chr1	28231124	28243100
ATP5IF1_chr1_28231124_28243100	0/0	g0002	64	13	16	23	5	7	ATP5IF1	chr1	28231124	28243100
ATP5IF1_chr1_28231124_28243100	0/0	g0003	50	0	0	41	0	9	ATP5IF1	chr1	28231124	28243100
ATP5IF1_chr1_28231124_28243100	0/0	g0004	33	26	3	0	1	3	ATP5IF1	chr1	28231124	28243100
ATP5IF1_chr1_28231124_28243100	0/0	g0005	18	0	0	16	0	2	ATP5IF1	chr1	28231124	28243100
ATP5IF1_chr1_28231124_28243100	0/0	g0006	11	9	2	0	0	0	ATP5IF1	chr1	28231124	28243100
ATP5IF1_chr1_28231124_28243100	0/0	g0007	10	7	3	0	0	0	ATP5IF1	chr1	28231124	28243100
ATP5IF1_chr1_28231124_28243100	0/0	g0008	5	0	4	1	0	0	ATP5IF1	chr1	28231124	28243100
ATP5IF1_chr1_28231124_28243100	0/0	g0009	3	3	0	0	0	0	ATP5IF1	chr1	28231124	28243100
ATP5IF1_chr1_28231124_28243100	0/0	g0010	3	3	0	0	0	0	ATP5IF1	chr1	28231124	28243100
ATP5IF1_chr1_28231124_28243100	0/0	g0011	2	2	0	0	0	0	ATP5IF1	chr1	28231124	28243100
ATP5IF1_chr1_28231124_28243100	0/0	g0012	2	0	2	0	0	0	ATP5IF1	chr1	28231124	28243100
ATP5IF1_chr1_28231124_28243100	0/0	g0013	1	1	0	0	0	0	ATP5IF1	chr1	28231124	28243100
ATP5IF1_chr1_28231124_28243100	0/0	g0014	1	1	0	0	0	0	ATP5IF1	chr1	28231124	28243100
ATP5IF1_chr1_28231124_28243100	0/0	g0015	1	0	1	0	0	0	ATP5IF1	chr1	28231124	28243100
ATP5IF1_chr1_28231124_28243100	0/0	g0016	1	0	0	1	0	0	ATP5IF1	chr1	28231124	28243100
ATP5IF1_chr1_28231124_28243100	0/0	g0017	1	0	1	0	0	0	ATP5IF1	chr1	28231124	28243100
ATP5MC1_chr17_48887787_48900871	0/0	g0001	123	2	27	73	6	15	ATP5MC1	chr17	48887787	48900871
ATP5MC1_chr17_48887787_48900871	0/0	g0002	78	19	18	33	2	6	ATP5MC1	chr17	48887787	48900871
ATP5MC1_chr17_48887787_48900871	0/1	g0003	75	32	10	19	3	10	ATP5MC1	chr17	48887787	48900871
ATP5MC1_chr17_48887787_48900871	0/0	g0004	30	23	5	1	1	0	ATP5MC1	chr17	48887787	48900871
ATP5MC1_chr17_48887787_48900871	0/0	g0005	6	6	0	0	0	0	ATP5MC1	chr17	48887787	48900871
ATP5MC1_chr17_48887787_48900871	1/0	g0006	6	5	0	0	0	0	ATP5MC1	chr17	48887787	48900871
ATP5MC1_chr17_48887787_48900871	0/0	g0007	4	0	0	1	0	3	ATP5MC1	chr17	48887787	48900871
ATP5MC1_chr17_48887787_48900871	0/0	g0008	2	0	0	2	0	0	ATP5MC1	chr17	48887787	48900871
ATP5MC1_chr17_48887787_48900871	0/0	g0009	1	1	0	0	0	0	ATP5MC1	chr17	48887787	48900871
ATP5MC1_chr17_48887787_48900871	0/0	g0010	1	1	0	0	0	0	ATP5MC1	chr17	48887787	48900871
ATP5MC1_chr17_48887787_48900871	0/0	g0011	1	0	0	1	0	0	ATP5MC1	chr17	48887787	48900871
ATP5MC1_chr17_48887787_48900871	0/0	g0012	1	0	0	1	0	0	ATP5MC1	chr17	48887787	48900871