JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATP5ME_chr4_667436_679276	1/1	g0001	280	45	58	136	10	29	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0002	34	18	9	0	2	5	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0003	18	3	0	10	1	4	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0004	12	10	2	0	0	0	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0005	8	0	2	6	0	0	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0006	6	0	3	0	3	0	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0007	5	1	3	0	0	1	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0008	4	4	0	0	0	0	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0009	3	0	0	3	0	0	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0010	3	3	0	0	0	0	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0011	2	2	0	0	0	0	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0012	2	2	0	0	0	0	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0013	2	0	1	0	1	0	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0014	2	0	0	2	0	0	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0015	1	1	0	0	0	0	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0016	1	0	1	0	0	0	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0017	1	0	0	0	0	1	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0018	1	0	0	1	0	0	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0019	1	0	0	0	1	0	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0020	1	0	0	1	0	0	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0021	1	0	0	1	0	0	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0022	1	1	0	0	0	0	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0023	1	1	0	0	0	0	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0024	1	0	1	0	0	0	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0025	1	1	0	0	0	0	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0026	1	0	0	0	0	1	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	g0027	1	0	0	0	0	1	ATP5ME	chr4	667436	679276
ATP5MF_chr7_99453195_99471167	1/0	g0001	90	1	19	50	5	14	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	g0002	56	0	3	42	1	10	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	g0003	23	2	7	9	0	5	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	g0004	16	10	4	1	1	0	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	g0005	14	2	1	6	0	5	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	g0006	11	11	0	0	0	0	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	g0007	6	6	0	0	0	0	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	g0008	5	5	0	0	0	0	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	g0009	5	4	1	0	0	0	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	g0010	4	3	0	0	1	0	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	g0011	4	1	3	0	0	0	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	g0012	4	4	0	0	0	0	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	g0013	4	4	0	0	0	0	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	g0014	3	3	0	0	0	0	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	g0015	3	3	0	0	0	0	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	g0016	3	0	0	3	0	0	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	g0017	3	3	0	0	0	0	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	g0018	3	0	1	0	2	0	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	g0019	3	1	2	0	0	0	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	g0020	3	0	0	2	0	1	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	g0021	3	0	0	3	0	0	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	g0022	3	2	1	0	0	0	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	g0023	3	1	0	2	0	0	ATP5MF	chr7	99453195	99471167