JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ATP5MJ_chr14_103907288_103926529	0/0	g0167	1	0	0	1	0	0	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	g0168	1	0	0	1	0	0	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	g0169	1	0	0	0	0	1	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	g0170	1	0	0	0	0	1	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	g0171	1	0	0	0	0	1	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	g0172	1	0	0	0	0	1	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	g0173	1	0	0	0	0	1	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	g0174	1	0	0	0	0	1	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	g0175	1	0	0	1	0	0	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	g0176	1	0	0	1	0	0	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	g0177	1	0	0	1	0	0	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	g0178	1	0	0	1	0	0	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	g0179	1	0	0	0	0	1	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	g0180	1	0	1	0	0	0	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	g0181	1	0	1	0	0	0	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	g0182	1	0	1	0	0	0	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	g0183	1	0	0	1	0	0	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	g0184	1	0	0	1	0	0	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	g0185	1	0	1	0	0	0	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	g0186	1	1	0	0	0	0	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	g0187	1	0	0	1	0	0	ATP5MJ	chr14	103907288	103926529
ATP5MJ_chr14_103907288_103926529	0/0	g0188	1	0	0	0	0	1	ATP5MJ	chr14	103907288	103926529
ATP5MK_chr10_103384050_103401475	1/0	g0001	101	15	18	59	3	5	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/1	g0002	86	3	18	47	2	15	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0003	26	2	11	11	2	0	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0004	25	1	6	18	0	0	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0005	20	3	1	15	1	0	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0006	13	12	1	0	0	0	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0007	10	1	0	8	0	1	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0008	8	0	1	7	0	0	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0009	8	1	1	5	0	1	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0010	7	7	0	0	0	0	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0011	7	0	3	0	3	1	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0012	6	5	1	0	0	0	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0013	6	6	0	0	0	0	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0014	6	0	2	0	0	4	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0015	5	5	0	0	0	0	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0016	5	0	1	0	2	2	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0017	5	3	2	0	0	0	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0018	4	0	2	1	0	1	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0019	4	0	0	4	0	0	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0020	3	0	0	3	0	0	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0021	3	0	0	3	0	0	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0022	3	0	1	2	0	0	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0023	3	2	1	0	0	0	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0024	2	0	0	2	0	0	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0025	2	2	0	0	0	0	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0026	2	1	1	0	0	0	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0027	2	0	1	1	0	0	ATP5MK	chr10	103384050	103401475
ATP5MK_chr10_103384050_103401475	0/0	g0028	2	0	0	2	0	0	ATP5MK	chr10	103384050	103401475